Literature DB >> 17804668

Ribosome biogenesis and the translation process in Escherichia coli.

Magdalena Kaczanowska1, Monica Rydén-Aulin.   

Abstract

Translation, the decoding of mRNA into protein, is the third and final element of the central dogma. The ribosome, a nucleoprotein particle, is responsible and essential for this process. The bacterial ribosome consists of three rRNA molecules and approximately 55 proteins, components that are put together in an intricate and tightly regulated way. When finally matured, the quality of the particle, as well as the amount of active ribosomes, must be checked. The focus of this review is ribosome biogenesis in Escherichia coli and its cross-talk with the ongoing protein synthesis. We discuss how the ribosomal components are produced and how their synthesis is regulated according to growth rate and the nutritional contents of the medium. We also present the many accessory factors important for the correct assembly process, the list of which has grown substantially during the last few years, even though the precise mechanisms and roles of most of the proteins are not understood.

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Year:  2007        PMID: 17804668      PMCID: PMC2168646          DOI: 10.1128/MMBR.00013-07

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   11.056


  207 in total

1.  Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA.

Authors:  C M Diges; O C Uhlenbeck
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

2.  Demonstration of the role of the DnaK chaperone system in assembly of 30S ribosomal subunits using a purified in vitro system.

Authors:  Jennifer A Maki; Daniel R Southworth; Gloria M Culver
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

3.  DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP.

Authors:  Brian J Paul; Melanie M Barker; Wilma Ross; David A Schneider; Cathy Webb; John W Foster; Richard L Gourse
Journal:  Cell       Date:  2004-08-06       Impact factor: 41.582

4.  Specific recognition of rpsO mRNA and 16S rRNA by Escherichia coli ribosomal protein S15 relies on both mimicry and site differentiation.

Authors:  Nathalie Mathy; Olivier Pellegrini; Alexander Serganov; Dinshaw J Patel; Chantal Ehresmann; Claude Portier
Journal:  Mol Microbiol       Date:  2004-05       Impact factor: 3.501

5.  Studies of the interaction of Escherichia coli YjeQ with the ribosome in vitro.

Authors:  Denis M Daigle; Eric D Brown
Journal:  J Bacteriol       Date:  2004-03       Impact factor: 3.490

6.  Polyadenylation of stable RNA precursors in vivo.

Authors:  Z Li; S Pandit; M P Deutscher
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

7.  Cell cycle arrest in Era GTPase mutants: a potential growth rate-regulated checkpoint in Escherichia coli.

Authors:  R A Britton; B S Powell; S Dasgupta; Q Sun; W Margolin; J R Lupski; D L Court
Journal:  Mol Microbiol       Date:  1998-02       Impact factor: 3.501

8.  Stringent control and growth-rate-dependent control have nonidentical promoter sequence requirements.

Authors:  C A Josaitis; T Gaal; R L Gourse
Journal:  Proc Natl Acad Sci U S A       Date:  1995-02-14       Impact factor: 11.205

9.  Recent developments in factor-facilitated ribosome assembly.

Authors:  Jennifer A Maki; Gloria M Culver
Journal:  Methods       Date:  2005-07       Impact factor: 3.608

10.  Recognition of boxA antiterminator RNA by the E. coli antitermination factors NusB and ribosomal protein S10.

Authors:  J R Nodwell; J Greenblatt
Journal:  Cell       Date:  1993-01-29       Impact factor: 41.582

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  174 in total

1.  Poly-alpha-glutamic acid synthesis using a novel catalytic activity of RimK from Escherichia coli K-12.

Authors:  Kuniki Kino; Toshinobu Arai; Yasuhiro Arimura
Journal:  Appl Environ Microbiol       Date:  2011-01-28       Impact factor: 4.792

2.  Nonessential plastid-encoded ribosomal proteins in tobacco: a developmental role for plastid translation and implications for reductive genome evolution.

Authors:  Tobias T Fleischmann; Lars B Scharff; Sibah Alkatib; Sebastian Hasdorf; Mark A Schöttler; Ralph Bock
Journal:  Plant Cell       Date:  2011-09-20       Impact factor: 11.277

3.  Structural insights into methyltransferase KsgA function in 30S ribosomal subunit biogenesis.

Authors:  Daniel Boehringer; Heather C O'Farrell; Jason P Rife; Nenad Ban
Journal:  J Biol Chem       Date:  2012-02-03       Impact factor: 5.157

4.  The heat shock protein YbeY is required for optimal activity of the 30S ribosomal subunit.

Authors:  Aviram Rasouly; Chen Davidovich; Eliora Z Ron
Journal:  J Bacteriol       Date:  2010-07-16       Impact factor: 3.490

5.  Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.

Authors:  Paul Dominic B Olinares; Lalit Ponnala; Klaas J van Wijk
Journal:  Mol Cell Proteomics       Date:  2010-04-26       Impact factor: 5.911

Review 6.  Taming free energy landscapes with RNA chaperones.

Authors:  Sarah A Woodson
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

7.  Pneumococcal RNase R globally impacts protein synthesis by regulating the amount of actively translating ribosomes.

Authors:  Cátia Bárria; Susana Domingues; Cecília Maria Arraiano
Journal:  RNA Biol       Date:  2019-01-13       Impact factor: 4.652

8.  Overexpression of RbfA in the absence of the KsgA checkpoint results in impaired translation initiation.

Authors:  Keith Connolly; Gloria Culver
Journal:  Mol Microbiol       Date:  2013-02-06       Impact factor: 3.501

9.  Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry.

Authors:  Stephen S Chen; Edit Sperling; Josh M Silverman; Joseph H Davis; James R Williamson
Journal:  Mol Biosyst       Date:  2012-10-30

10.  RBF1, a plant homolog of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S ribosomal RNA.

Authors:  Rikard Fristedt; Lars B Scharff; Cornelia A Clarke; Qin Wang; Chentao Lin; Sabeeha S Merchant; Ralph Bock
Journal:  Plant Physiol       Date:  2013-11-08       Impact factor: 8.340

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