Literature DB >> 23103768

Long non-coding RNA gadd7 interacts with TDP-43 and regulates Cdk6 mRNA decay.

Xuefeng Liu1, Dan Li, Weimin Zhang, Mingzhou Guo, Qimin Zhan.   

Abstract

Long non-coding RNAs (lncRNAs) transcribed extensively from the genome have been proposed to be key regulators of diverse biological processes. However, little is known about the role of lncRNAs in regulation of the cell-cycle G1/S checkpoint following DNA damage, a key step in the maintenance of genomic fidelity. Here we show that growth-arrested DNA damage-inducible gene 7 (gadd7), a DNA damage-inducible lncRNA, regulates the G1/S checkpoint in response to UV irradiation. Interestingly, UV-induced gadd7 directly binds to TAR DNA-binding protein (TDP-43) and interferes with the interaction between TDP-43 and cyclin-dependent kinase 6 (Cdk6) mRNA, resulting in Cdk6 mRNA degradation. These findings demonstrate a role for gadd7 in controlling cell-cycle progression and define a novel mechanism by which lncRNAs modulate mRNA expression at the post-transcriptional level by altering mRNA stability.

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Year:  2012        PMID: 23103768      PMCID: PMC3512391          DOI: 10.1038/emboj.2012.292

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  47 in total

1.  Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure.

Authors:  Elfar Torarinsson; Milena Sawera; Jakob H Havgaard; Merete Fredholm; Jan Gorodkin
Journal:  Genome Res       Date:  2006-06-02       Impact factor: 9.043

2.  Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.

Authors:  Stefan Washietl; Ivo L Hofacker; Melanie Lukasser; Alexander Hüttenhofer; Peter F Stadler
Journal:  Nat Biotechnol       Date:  2005-11       Impact factor: 54.908

3.  Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function.

Authors:  Ken C Pang; Martin C Frith; John S Mattick
Journal:  Trends Genet       Date:  2005-11-10       Impact factor: 11.639

Review 4.  Non-coding RNA.

Authors:  John S Mattick; Igor V Makunin
Journal:  Hum Mol Genet       Date:  2006-04-15       Impact factor: 6.150

5.  A starvation-induced noncoding RNA modulates expression of Dicer-regulated genes.

Authors:  Sabine Hellwig; Brenda L Bass
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-22       Impact factor: 11.205

6.  A novel DNA damage-inducible transcript, gadd7, inhibits cell growth, but lacks a protein product.

Authors:  M C Hollander; I Alamo; A J Fornace
Journal:  Nucleic Acids Res       Date:  1996-05-01       Impact factor: 16.971

7.  Production of large numbers of mitotic mammalian cells by use of the reversible microtubule inhibitor nocodazole. Nocodazole accumulated mitotic cells.

Authors:  G W Zieve; D Turnbull; J M Mullins; J R McIntosh
Journal:  Exp Cell Res       Date:  1980-04       Impact factor: 3.905

8.  The non-coding RNA gadd7 is a regulator of lipid-induced oxidative and endoplasmic reticulum stress.

Authors:  Rita T Brookheart; Carlos I Michel; Laura L Listenberger; Daniel S Ory; Jean E Schaffer
Journal:  J Biol Chem       Date:  2009-01-15       Impact factor: 5.157

9.  TDP-43 binds heterogeneous nuclear ribonucleoprotein A/B through its C-terminal tail: an important region for the inhibition of cystic fibrosis transmembrane conductance regulator exon 9 splicing.

Authors:  Emanuele Buratti; Antonia Brindisi; Maurizio Giombi; Sergio Tisminetzky; Youhna M Ayala; Francisco E Baralle
Journal:  J Biol Chem       Date:  2005-09-12       Impact factor: 5.157

10.  Structural insights into TDP-43 in nucleic-acid binding and domain interactions.

Authors:  Pan-Hsien Kuo; Lyudmila G Doudeva; Yi-Ting Wang; Che-Kun James Shen; Hanna S Yuan
Journal:  Nucleic Acids Res       Date:  2009-01-27       Impact factor: 16.971

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  90 in total

1.  Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline.

Authors:  Jianqiang Bao; Jingwen Wu; Andrew S Schuster; Grant W Hennig; Wei Yan
Journal:  Biol Reprod       Date:  2013-11-07       Impact factor: 4.285

2.  Expression of long noncoding RNA-HOX transcript antisense intergenic RNA in oral squamous cell carcinoma and effect on cell growth.

Authors:  Jie Wu; Hongjun Xie
Journal:  Tumour Biol       Date:  2015-06-03

3.  Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1.

Authors:  Kotb Abdelmohsen; Amaresh C Panda; Rachel Munk; Ioannis Grammatikakis; Dawood B Dudekula; Supriyo De; Jiyoung Kim; Ji Heon Noh; Kyoung Mi Kim; Jennifer L Martindale; Myriam Gorospe
Journal:  RNA Biol       Date:  2017-01-12       Impact factor: 4.652

4.  Targeting LINC00673 expression triggers cellular senescence in lung cancer.

Authors:  Anna Roth; Karine Boulay; Matthias Groß; Maria Polycarpou-Schwarz; Frédérick A Mallette; Marine Regnier; Or Bida; Doron Ginsberg; Arne Warth; Philipp A Schnabel; Thomas Muley; Michael Meister; Heike Zabeck; Hans Hoffmann; Sven Diederichs
Journal:  RNA Biol       Date:  2018-12-07       Impact factor: 4.652

Review 5.  Posttranscriptional gene regulation by long noncoding RNA.

Authors:  Je-Hyun Yoon; Kotb Abdelmohsen; Myriam Gorospe
Journal:  J Mol Biol       Date:  2012-11-23       Impact factor: 5.469

6.  G1/S Cell Cycle Checkpoint Dysfunction in Lymphoblasts from Sporadic Parkinson's Disease Patients.

Authors:  Noemí Esteras; Carolina Alquézar; Fernando Bartolomé; Ana de la Encarnación; Félix Bermejo-Pareja; José Antonio Molina; Ángeles Martín-Requero
Journal:  Mol Neurobiol       Date:  2014-09-03       Impact factor: 5.590

Review 7.  TDP43 and RNA instability in amyotrophic lateral sclerosis.

Authors:  Kaitlin Weskamp; Sami J Barmada
Journal:  Brain Res       Date:  2018-01-31       Impact factor: 3.252

Review 8.  Faulty RNA splicing: consequences and therapeutic opportunities in brain and muscle disorders.

Authors:  Vittoria Pagliarini; Piergiorgio La Rosa; Claudio Sette
Journal:  Hum Genet       Date:  2017-04-22       Impact factor: 4.132

Review 9.  TDP-43/FUS in motor neuron disease: Complexity and challenges.

Authors:  Erika N Guerrero; Haibo Wang; Joy Mitra; Pavana M Hegde; Sara E Stowell; Nicole F Liachko; Brian C Kraemer; Ralph M Garruto; K S Rao; Muralidhar L Hegde
Journal:  Prog Neurobiol       Date:  2016-09-28       Impact factor: 11.685

Review 10.  Long noncoding RNAs in innate and adaptive immunity.

Authors:  Katherine A Fitzgerald; Daniel R Caffrey
Journal:  Curr Opin Immunol       Date:  2013-12-22       Impact factor: 7.486

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