Literature DB >> 23101787

Electrostatically guided dynamics--the root of fidelity in a promiscuous terpene synthase?

Dan Thomas Major1, Michal Weitman.   

Abstract

Terpene cyclases are responsible for the initial cyclization cascade in the multistep synthesis of more than 60,000 known natural products. This abundance of compounds is generated using a very limited pool of substrates based on linear isoprenoids. The astounding chemodiversity obtained by terpene cyclases suggests a tremendous catalytic challenge to these often promiscuous enzymes. In the current study we present a detailed mechanistic view of the biosynthesis of the monoterpene bornyl diphosphate (BPP) from geranyl diphosphate by BPP synthase using state of the art simulation methods. We identify the bornyl cation as an enzyme-induced bifurcation point on the multidimensional free energy surface, connecting between the product BPP and the side product camphene. Chemical dynamics simulations suggest that the active site diphosphate moiety steers reaction trajectories toward product formation. Nonetheless, chemical dynamics is not precise enough for exclusive product formation, providing a rationale for the lack of fidelity in this promiscuous terpene cyclase.

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Year:  2012        PMID: 23101787     DOI: 10.1021/ja308295p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  21 in total

1.  Experiment and Simulation Reveal How Mutations in Functional Plasticity Regions Guide Plant Monoterpene Synthase Product Outcome.

Authors:  Nicole G H Leferink; Kara E Ranaghan; Vijaykumar Karuppiah; Andrew Currin; Marc W van der Kamp; Adrian J Mulholland; Nigel S Scrutton
Journal:  ACS Catal       Date:  2018-03-24       Impact factor: 13.084

Review 2.  Structural and Chemical Biology of Terpenoid Cyclases.

Authors:  David W Christianson
Journal:  Chem Rev       Date:  2017-08-25       Impact factor: 60.622

3.  Comment on "Substrate Folding Modes in Trichodiene Synthase: A Determinant of Chemo- and Stereoselectivity".

Authors:  Mudit Dixit; Michal Weitman; Jiali Gao; Dan T Major
Journal:  ACS Catal       Date:  2017-10-09       Impact factor: 13.084

4.  Crystal Structure and Mechanistic Molecular Modeling Studies of Mycobacterium tuberculosis Diterpene Cyclase Rv3377c.

Authors:  Yue Zhang; Lisa M Prach; Terrence E O'Brien; Frank DiMaio; Daniil M Prigozhin; Jacob E Corn; Tom Alber; Justin B Siegel; Dean J Tantillo
Journal:  Biochemistry       Date:  2020-11-12       Impact factor: 3.162

5.  Gas-phase reactivity of [Ca(formamide)]2+ complex: an example of different dynamical behaviours.

Authors:  Ana Martin-Somer; Riccardo Spezia; Manuel Yáñez
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-04-28       Impact factor: 4.226

6.  Predicting Productive Binding Modes for Substrates and Carbocation Intermediates in Terpene Synthases-Bornyl Diphosphate Synthase as a Representative Case.

Authors:  Terrence E O'Brien; Steven J Bertolani; Yue Zhang; Justin B Siegel; Dean J Tantillo
Journal:  ACS Catal       Date:  2018-03-08       Impact factor: 13.084

7.  Chemical Control in the Battle against Fidelity in Promiscuous Natural Product Biosynthesis: The Case of Trichodiene Synthase.

Authors:  Mudit Dixit; Michal Weitman; Jiali Gao; Dan T Major
Journal:  ACS Catal       Date:  2016-12-02       Impact factor: 13.084

8.  Identification of amino acid networks governing catalysis in the closed complex of class I terpene synthases.

Authors:  Patrick Schrepfer; Alexander Buettner; Christian Goerner; Michael Hertel; Jeaphianne van Rijn; Frank Wallrapp; Wolfgang Eisenreich; Volker Sieber; Robert Kourist; Thomas Brück
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-03       Impact factor: 11.205

9.  Influence of water and enzyme SpnF on the dynamics and energetics of the ambimodal [6+4]/[4+2] cycloaddition.

Authors:  Zhongyue Yang; Song Yang; Peiyuan Yu; Yanwei Li; Charles Doubleday; Jiyong Park; Ashay Patel; Byung-Sun Jeon; William K Russell; Hung-Wen Liu; David H Russell; Kendall N Houk
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-18       Impact factor: 11.205

10.  Biosynthesis of lycosantalonol, a cis-prenyl derived diterpenoid.

Authors:  Jiachen Zi; Yuki Matsuba; Young J Hong; Alana J Jackson; Dean J Tantillo; Eran Pichersky; Reuben J Peters
Journal:  J Am Chem Soc       Date:  2014-11-21       Impact factor: 15.419

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