Literature DB >> 23097423

RNase III-independent microRNA biogenesis in mammalian cells.

Thomas Maurin1, Demián Cazalla, Shiuan Yang, Diane Bortolamiol-Becet, Eric C Lai.   

Abstract

RNase III enzymes are fundamental to the biogenesis of microRNAs (miRNAs) and small interfering RNAs (siRNAs) in all species studied. Although alternative miRNA pathways independent of Drosha or Dicer exist, each still requires one RNase III-type enzyme. Here, we describe two strategies that marry either RNase Z or the Integrator complex with the slicing activity of Argonaute2 to generate highly functional mature miRNAs. We provide stringent validation of their RNase III independence by demonstrating efficient miRNA biogenesis and activity in Drosha and Dicer knockout cells. These data provide proof-of-principle evidence for additional mechanistic possibilities for efficient generation of small regulatory RNAs, and represent novel silencing triggers that may be exploited for technical purposes.

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Year:  2012        PMID: 23097423      PMCID: PMC3504669          DOI: 10.1261/rna.036194.112

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  52 in total

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Authors:  Jr-Shiuan Yang; Eric C Lai
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2.  Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans.

Authors:  Wei-Jen Chung; Phaedra Agius; Jakub O Westholm; Michael Chen; Katsutomo Okamura; Nicolas Robine; Christina S Leslie; Eric C Lai
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Authors:  Huibin Zhang; Jay M Maniar; Andrew Z Fire
Journal:  Genes Dev       Date:  2011-08-01       Impact factor: 11.361

Review 4.  Mirtrons: microRNA biogenesis via splicing.

Authors:  Jakub O Westholm; Eric C Lai
Journal:  Biochimie       Date:  2011-06-21       Impact factor: 4.079

5.  R2D2 organizes small regulatory RNA pathways in Drosophila.

Authors:  Katsutomo Okamura; Nicolas Robine; Ying Liu; Qinghua Liu; Eric C Lai
Journal:  Mol Cell Biol       Date:  2010-12-06       Impact factor: 4.272

Review 6.  Small RNA sorting: matchmaking for Argonautes.

Authors:  Benjamin Czech; Gregory J Hannon
Journal:  Nat Rev Genet       Date:  2010-11-30       Impact factor: 53.242

7.  A mammalian herpesvirus uses noncanonical expression and processing mechanisms to generate viral MicroRNAs.

Authors:  Hal P Bogerd; Heather W Karnowski; Xuezhong Cai; Jinwook Shin; Michael Pohlers; Bryan R Cullen
Journal:  Mol Cell       Date:  2010-01-15       Impact factor: 17.970

Review 8.  The many faces of RNAi.

Authors:  René F Ketting
Journal:  Dev Cell       Date:  2011-02-15       Impact factor: 12.270

9.  A primate herpesvirus uses the integrator complex to generate viral microRNAs.

Authors:  Demián Cazalla; Mingyi Xie; Joan A Steitz
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

Review 10.  Vive la différence: biogenesis and evolution of microRNAs in plants and animals.

Authors:  Michael J Axtell; Jakub O Westholm; Eric C Lai
Journal:  Genome Biol       Date:  2011-04-28       Impact factor: 13.583

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  20 in total

Review 1.  MicroRNAs in neuronal communication.

Authors:  Guilherme Shigueto Vilar Higa; Erica de Sousa; Lais Takata Walter; Erika Reime Kinjo; Rodrigo Ribeiro Resende; Alexandre Hiroaki Kihara
Journal:  Mol Neurobiol       Date:  2014-01-03       Impact factor: 5.590

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Authors:  Mazhar Hussain; Scott L O'Neill; Sassan Asgari
Journal:  RNA Biol       Date:  2013-12-10       Impact factor: 4.652

Review 3.  In vivo RNAi screens: concepts and applications.

Authors:  Shane Crotty; Matthew E Pipkin
Journal:  Trends Immunol       Date:  2015-04-27       Impact factor: 16.687

4.  Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals.

Authors:  Katsutomo Okamura; Erik Ladewig; Li Zhou; Eric C Lai
Journal:  Genes Dev       Date:  2013-03-27       Impact factor: 11.361

Review 5.  Versatile microRNA biogenesis in animals and their viruses.

Authors:  Mingyi Xie; Joan A Steitz
Journal:  RNA Biol       Date:  2014-05-07       Impact factor: 4.652

6.  Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor.

Authors:  Diane Bortolamiol-Becet; Fuqu Hu; David Jee; Jiayu Wen; Katsutomo Okamura; Ching-Jung Lin; Stefan L Ameres; Eric C Lai
Journal:  Mol Cell       Date:  2015-07-02       Impact factor: 17.970

7.  Adaptive regulation of testis gene expression and control of male fertility by the Drosophila hairpin RNA pathway. [Corrected].

Authors:  Jiayu Wen; Hong Duan; Fernando Bejarano; Katsutomo Okamura; Lacramioara Fabian; Julie A Brill; Diane Bortolamiol-Becet; Raquel Martin; J Graham Ruby; Eric C Lai
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8.  MicroRNA-like viral small RNA from Dengue virus 2 autoregulates its replication in mosquito cells.

Authors:  Mazhar Hussain; Sassan Asgari
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-03       Impact factor: 11.205

9.  Genomic Clustering Facilitates Nuclear Processing of Suboptimal Pri-miRNA Loci.

Authors:  Renfu Shang; S Chan Baek; Kijun Kim; Boseon Kim; V Narry Kim; Eric C Lai
Journal:  Mol Cell       Date:  2020-04-16       Impact factor: 17.970

10.  MicroRNAs Regulating Autophagy in Neurodegeneration.

Authors:  Qingxuan Lai; Nikolai Kovzel; Ruslan Konovalov; Ilya A Vinnikov
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

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