Literature DB >> 21116305

Small RNA sorting: matchmaking for Argonautes.

Benjamin Czech1, Gregory J Hannon.   

Abstract

Small RNAs directly or indirectly impact nearly every biological process in eukaryotic cells. To perform their myriad roles, not only must precise small RNA species be generated, but they must also be loaded into specific effector complexes called RNA-induced silencing complexes (RISCs). Argonaute proteins form the core of RISCs and different members of this large family have specific expression patterns, protein binding partners and biochemical capabilities. In this Review, we explore the mechanisms that pair specific small RNA strands with their partner proteins, with an eye towards the substantial progress that has been recently made in understanding the sorting of the major small RNA classes - microRNAs (miRNAs) and small interfering RNAs (siRNAs) - in plants and animals.

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Year:  2010        PMID: 21116305      PMCID: PMC3703915          DOI: 10.1038/nrg2916

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  174 in total

1.  Argonaute2 is the catalytic engine of mammalian RNAi.

Authors:  Jidong Liu; Michelle A Carmell; Fabiola V Rivas; Carolyn G Marsden; J Michael Thomson; Ji-Joon Song; Scott M Hammond; Leemor Joshua-Tor; Gregory J Hannon
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

2.  MicroRNA genes are transcribed by RNA polymerase II.

Authors:  Yoontae Lee; Minju Kim; Jinju Han; Kyu-Hyun Yeom; Sanghyuk Lee; Sung Hee Baek; V Narry Kim
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

3.  Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.

Authors:  Franck Vazquez; Hervé Vaucheret; Ramya Rajagopalan; Christelle Lepers; Virginie Gasciolli; Allison C Mallory; Jean-Louis Hilbert; David P Bartel; Patrice Crété
Journal:  Mol Cell       Date:  2004-10-08       Impact factor: 17.970

4.  The Microprocessor complex mediates the genesis of microRNAs.

Authors:  Richard I Gregory; Kai-Ping Yan; Govindasamy Amuthan; Thimmaiah Chendrimada; Behzad Doratotaj; Neil Cooch; Ramin Shiekhattar
Journal:  Nature       Date:  2004-11-07       Impact factor: 49.962

5.  A two-hit trigger for siRNA biogenesis in plants.

Authors:  Michael J Axtell; Calvin Jan; Ramya Rajagopalan; David P Bartel
Journal:  Cell       Date:  2006-11-03       Impact factor: 41.582

6.  Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs.

Authors:  Xuezhong Cai; Curt H Hagedorn; Bryan R Cullen
Journal:  RNA       Date:  2004-11-03       Impact factor: 4.942

7.  Processing of primary microRNAs by the Microprocessor complex.

Authors:  Ahmet M Denli; Bastiaan B J Tops; Ronald H A Plasterk; René F Ketting; Gregory J Hannon
Journal:  Nature       Date:  2004-11-07       Impact factor: 49.962

8.  Mammalian mirtron genes.

Authors:  Eugene Berezikov; Wei-Jen Chung; Jason Willis; Edwin Cuppen; Eric C Lai
Journal:  Mol Cell       Date:  2007-10-26       Impact factor: 17.970

9.  SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis.

Authors:  Angela Peragine; Manabu Yoshikawa; Gang Wu; Heidi L Albrecht; R Scott Poethig
Journal:  Genes Dev       Date:  2004-10-01       Impact factor: 11.361

10.  Identification of mammalian microRNA host genes and transcription units.

Authors:  Antony Rodriguez; Sam Griffiths-Jones; Jennifer L Ashurst; Allan Bradley
Journal:  Genome Res       Date:  2004-09-13       Impact factor: 9.043

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  321 in total

Review 1.  MicroRNAs, wild-type and mutant p53: more questions than answers.

Authors:  Matthew Jones; Ashish Lal
Journal:  RNA Biol       Date:  2012-06-01       Impact factor: 4.652

Review 2.  Nuclear architecture and dynamics: territories, nuclear bodies, and nucleocytoplasmic trafficking.

Authors:  Alice Y Cheung; Anireddy S N Reddy
Journal:  Plant Physiol       Date:  2012-01       Impact factor: 8.340

Review 3.  Evolution of microRNA diversity and regulation in animals.

Authors:  Eugene Berezikov
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

Review 4.  MicroRNAs in mucosal inflammation.

Authors:  Viola Neudecker; Xiaoyi Yuan; Jessica L Bowser; Holger K Eltzschig
Journal:  J Mol Med (Berl)       Date:  2017-07-20       Impact factor: 4.599

Review 5.  Charity begins at home: non-coding RNA functions in DNA repair.

Authors:  Dipanjan Chowdhury; Young Eun Choi; Marie Eve Brault
Journal:  Nat Rev Mol Cell Biol       Date:  2013-02-06       Impact factor: 94.444

6.  TRIM65 regulates microRNA activity by ubiquitination of TNRC6.

Authors:  Shitao Li; Lingyan Wang; Bishi Fu; Michael A Berman; Alos Diallo; Martin E Dorf
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-28       Impact factor: 11.205

7.  Drosha as an interferon-independent antiviral factor.

Authors:  Jillian S Shapiro; Sonja Schmid; Lauren C Aguado; Leah R Sabin; Ari Yasunaga; Jaehee V Shim; David Sachs; Sara Cherry; Benjamin R tenOever
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-28       Impact factor: 11.205

8.  Small creatures use small RNAs to direct antiviral defenses.

Authors:  Leah R Sabin; Sara Cherry
Journal:  Eur J Immunol       Date:  2013-01       Impact factor: 5.532

9.  RNase III-independent microRNA biogenesis in mammalian cells.

Authors:  Thomas Maurin; Demián Cazalla; Shiuan Yang; Diane Bortolamiol-Becet; Eric C Lai
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

10.  Inefficient SRP interaction with a nascent chain triggers a mRNA quality control pathway.

Authors:  Andrey L Karamyshev; Anna E Patrick; Zemfira N Karamysheva; Dustin S Griesemer; Henry Hudson; Sandra Tjon-Kon-Sang; IngMarie Nilsson; Hendrik Otto; Qinghua Liu; Sabine Rospert; Gunnar von Heijne; Arthur E Johnson; Philip J Thomas
Journal:  Cell       Date:  2014-01-16       Impact factor: 41.582

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