Literature DB >> 18755990

Translational bioinformatics: coming of age.

Atul J Butte1.   

Abstract

The American Medical Informatics Association (AMIA) recently augmented the scope of its activities to encompass translational bioinformatics as a third major domain of informatics. The AMIA has defined translational bioinformatics as "... the development of storage, analytic, and interpretive methods to optimize the transformation of increasingly voluminous biomedical data into proactive, predictive, preventative, and participatory health." In this perspective, I will list eight reasons why this is an excellent time to be studying translational bioinformatics, including the significant increase in funding opportunities available for informatics from the United States National Institutes of Health, and the explosion of publicly-available data sets of molecular measurements. I end with the significant challenges we face in building a community of future investigators in Translational Bioinformatics.

Mesh:

Year:  2008        PMID: 18755990      PMCID: PMC2585538          DOI: 10.1197/jamia.M2824

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  33 in total

1.  Significance analysis of microarrays applied to the ionizing radiation response.

Authors:  V G Tusher; R Tibshirani; G Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

2.  From bench to bedside... research makes the translational transition.

Authors:  B Horton
Journal:  Nature       Date:  1999-11-11       Impact factor: 49.962

3.  Variation is the spice of life.

Authors:  L Kruglyak; D A Nickerson
Journal:  Nat Genet       Date:  2001-03       Impact factor: 38.330

4.  Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors:  A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

5.  GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways.

Authors:  Kam D Dahlquist; Nathan Salomonis; Karen Vranizan; Steven C Lawlor; Bruce R Conklin
Journal:  Nat Genet       Date:  2002-05       Impact factor: 38.330

Review 6.  Genomic medicine--a primer.

Authors:  Alan E Guttmacher; Francis S Collins
Journal:  N Engl J Med       Date:  2002-11-07       Impact factor: 91.245

7.  Enabling integrative genomic analysis of high-impact human diseases through text mining.

Authors:  Joel Dudley; Atul J Butte
Journal:  Pac Symp Biocomput       Date:  2008

8.  Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes.

Authors:  Sangeeta B English; Atul J Butte
Journal:  Bioinformatics       Date:  2007-10-05       Impact factor: 6.937

9.  Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.

Authors:  A A Alizadeh; M B Eisen; R E Davis; C Ma; I S Lossos; A Rosenwald; J C Boldrick; H Sabet; T Tran; X Yu; J I Powell; L Yang; G E Marti; T Moore; J Hudson; L Lu; D B Lewis; R Tibshirani; G Sherlock; W C Chan; T C Greiner; D D Weisenburger; J O Armitage; R Warnke; R Levy; W Wilson; M R Grever; J C Byrd; D Botstein; P O Brown; L M Staudt
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

10.  Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics.

Authors:  Vamsi K Mootha; Pierre Lepage; Kathleen Miller; Jakob Bunkenborg; Michael Reich; Majbrit Hjerrild; Terrye Delmonte; Amelie Villeneuve; Robert Sladek; Fenghao Xu; Grant A Mitchell; Charles Morin; Matthias Mann; Thomas J Hudson; Brian Robinson; John D Rioux; Eric S Lander
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-14       Impact factor: 11.205

View more
  46 in total

1.  Data analysis and data mining: current issues in biomedical informatics.

Authors:  R Bellazzi; M Diomidous; I N Sarkar; K Takabayashi; A Ziegler; A T McCray
Journal:  Methods Inf Med       Date:  2011       Impact factor: 2.176

2.  Foundational biomedical informatics research in the clinical and translational science era: a call to action.

Authors:  Philip R O Payne; Peter J Embi; Joyce Niland
Journal:  J Am Med Inform Assoc       Date:  2010 Nov-Dec       Impact factor: 4.497

3.  From Molecules to Patients: The Clinical Applications of Translational Bioinformatics.

Authors:  K Regan; P R O Payne
Journal:  Yearb Med Inform       Date:  2015-08-13

4.  Clinical research informatics: challenges, opportunities and definition for an emerging domain.

Authors:  Peter J Embi; Philip R O Payne
Journal:  J Am Med Inform Assoc       Date:  2009-03-04       Impact factor: 4.497

5.  Making it personal: translational bioinformatics.

Authors:  Atul J Butte; Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2013 Jul-Aug       Impact factor: 4.497

6.  Improving data and knowledge management to better integrate health care and research.

Authors:  M Cases; L I Furlong; J Albanell; R B Altman; R Bellazzi; S Boyer; A Brand; A J Brookes; S Brunak; T W Clark; J Gea; P Ghazal; N Graf; R Guigó; T E Klein; N López-Bigas; V Maojo; B Mons; M Musen; J L Oliveira; A Rowe; P Ruch; A Shabo; E H Shortliffe; A Valencia; J van der Lei; M A Mayer; F Sanz
Journal:  J Intern Med       Date:  2013-07-15       Impact factor: 8.989

7.  Current methodologies for translational bioinformatics.

Authors:  Yves A Lussier; Atul J Butte; Lawrence Hunter
Journal:  J Biomed Inform       Date:  2010-05-12       Impact factor: 6.317

Review 8.  Data-driven methods to discover molecular determinants of serious adverse drug events.

Authors:  A P Chiang; A J Butte
Journal:  Clin Pharmacol Ther       Date:  2009-01-28       Impact factor: 6.875

9.  Clinical Bioinformatics: challenges and opportunities.

Authors:  Riccardo Bellazzi; Marco Masseroli; Shawn Murphy; Amnon Shabo; Paolo Romano
Journal:  BMC Bioinformatics       Date:  2012-09-07       Impact factor: 3.169

10.  Advances in translational bioinformatics: computational approaches for the hunting of disease genes.

Authors:  Maricel G Kann
Journal:  Brief Bioinform       Date:  2009-12-10       Impact factor: 11.622

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.