Literature DB >> 23089945

Biological and biomedical applications of engineered nucleases.

Yunzhi Pan1, Li Xiao, Alice S S Li, Xu Zhang, Pierre Sirois, Jia Zhang, Kai Li.   

Abstract

The development of engineered nucleases is the fruit of a new technological approach developed in the last two decades which has led to significant benefits on genome engineering, particularly on gene therapy. These applications enable efficient and specific genetic modifications via the induction of a double-strand break (DSB) in a specific genomic target sequence, followed by the homology-directed repair (HDR) or non-homologous end joining (NHEJ) pathways. In addition to the application on gene modification in cells and intact organisms, a number of recent papers have reported that this gene editing technology can be applied effectively to human diseases. With the promising data obtained using engineered endonucleases in gene therapy, it appears reasonable to expect that more diseases could be treated and even be cured in this new era of individualized medicine. This paper first brief introduces the development of engineered nucleases with a special emphasis on zinc-finger nucleases (ZFNs) and transcription activator-like effector (TALE) nucleases (TALENs), and then takes CCR5-based gene therapy as an example to discuss the therapeutic applications of engineered nucleases.

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Year:  2013        PMID: 23089945     DOI: 10.1007/s12033-012-9613-9

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  63 in total

1.  Challenges and future expectations of reversed gene therapy.

Authors:  Nongyue He; Xin Zeng; Weida Wang; Kunlong Deng; Yunzhi Pan; Li Xiao; Jia Zhang; Kai Li
Journal:  J Nanosci Nanotechnol       Date:  2011-10

2.  De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks.

Authors:  Magdy M Mahfouz; Lixin Li; Md Shamimuzzaman; Anjar Wibowo; Xiaoyun Fang; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-24       Impact factor: 11.205

3.  Targeted genome editing across species using ZFNs and TALENs.

Authors:  Andrew J Wood; Te-Wen Lo; Bryan Zeitler; Catherine S Pickle; Edward J Ralston; Andrew H Lee; Rainier Amora; Jeffrey C Miller; Elo Leung; Xiangdong Meng; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Barbara J Meyer
Journal:  Science       Date:  2011-06-23       Impact factor: 47.728

4.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

5.  Highly efficient deletion of FUT8 in CHO cell lines using zinc-finger nucleases yields cells that produce completely nonfucosylated antibodies.

Authors:  Laetitia Malphettes; Yevgeniy Freyvert; Jennifer Chang; Pei-Qi Liu; Edmond Chan; Jeffrey C Miller; Zhe Zhou; Thu Nguyen; Christina Tsai; Andrew W Snowden; Trevor N Collingwood; Philip D Gregory; Gregory J Cost
Journal:  Biotechnol Bioeng       Date:  2010-08-01       Impact factor: 4.530

6.  Efficient gene targeting in Drosophila with zinc-finger nucleases.

Authors:  Kelly Beumer; Gargi Bhattacharyya; Marina Bibikova; Jonathan K Trautman; Dana Carroll
Journal:  Genetics       Date:  2006-02-01       Impact factor: 4.562

7.  Generation of knockout rats with X-linked severe combined immunodeficiency (X-SCID) using zinc-finger nucleases.

Authors:  Tomoji Mashimo; Akiko Takizawa; Birger Voigt; Kazuto Yoshimi; Hiroshi Hiai; Takashi Kuramoto; Tadao Serikawa
Journal:  PLoS One       Date:  2010-01-25       Impact factor: 3.240

8.  Genetic engineering of human pluripotent cells using TALE nucleases.

Authors:  Dirk Hockemeyer; Haoyi Wang; Samira Kiani; Christine S Lai; Qing Gao; John P Cassady; Gregory J Cost; Lei Zhang; Yolanda Santiago; Jeffrey C Miller; Bryan Zeitler; Jennifer M Cherone; Xiangdong Meng; Sarah J Hinkley; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Rudolf Jaenisch
Journal:  Nat Biotechnol       Date:  2011-07-07       Impact factor: 54.908

9.  A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity.

Authors:  Claudio Mussolino; Robert Morbitzer; Fabienne Lütge; Nadine Dannemann; Thomas Lahaye; Toni Cathomen
Journal:  Nucleic Acids Res       Date:  2011-08-03       Impact factor: 16.971

10.  High-frequency modification of plant genes using engineered zinc-finger nucleases.

Authors:  Jeffrey A Townsend; David A Wright; Ronnie J Winfrey; Fengli Fu; Morgan L Maeder; J Keith Joung; Daniel F Voytas
Journal:  Nature       Date:  2009-04-29       Impact factor: 49.962

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  14 in total

Review 1.  Applications of TALENs and CRISPR/Cas9 in human cells and their potentials for gene therapy.

Authors:  Jingwen Niu; Bin Zhang; Hu Chen
Journal:  Mol Biotechnol       Date:  2014-08       Impact factor: 2.695

Review 2.  Bacterial non-specific nucleases of the phospholipase D superfamily and their biotechnological potential.

Authors:  Lynn Sophie Schwardmann; Volker Nölle; Skander Elleuche
Journal:  Appl Microbiol Biotechnol       Date:  2020-02-21       Impact factor: 4.813

3.  The use of mitochondria-targeted endonucleases to manipulate mtDNA.

Authors:  Sandra R Bacman; Sion L Williams; Milena Pinto; Carlos T Moraes
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

4.  Efficient ablation of genes in human hematopoietic stem and effector cells using CRISPR/Cas9.

Authors:  Pankaj K Mandal; Leonardo M R Ferreira; Ryan Collins; Torsten B Meissner; Christian L Boutwell; Max Friesen; Vladimir Vrbanac; Brian S Garrison; Alexei Stortchevoi; David Bryder; Kiran Musunuru; Harrison Brand; Andrew M Tager; Todd M Allen; Michael E Talkowski; Derrick J Rossi; Chad A Cowan
Journal:  Cell Stem Cell       Date:  2014-11-06       Impact factor: 24.633

5.  Best Practices in qPCR and dPCR Validation in Regulated Bioanalytical Laboratories.

Authors:  Amanda Hays; Rafiq Islam; Katie Matys; Dave Williams
Journal:  AAPS J       Date:  2022-02-22       Impact factor: 4.009

Review 6.  Making ends meet: targeted integration of DNA fragments by genome editing.

Authors:  Yutaka Yamamoto; Susan A Gerbi
Journal:  Chromosoma       Date:  2018-07-12       Impact factor: 4.316

7.  Heterodimeric TALENs induce targeted heritable mutations in the crustacean Daphnia magna.

Authors:  Akiko Naitou; Yasuhiko Kato; Takashi Nakanishi; Tomoaki Matsuura; Hajime Watanabe
Journal:  Biol Open       Date:  2015-02-13       Impact factor: 2.422

8.  Use of the heteroduplex mobility assay and cell sorting to select genome sequences of the CCR5 gene in HEK 293T cells edited by transcription activator-like effector nucleases.

Authors:  Arildo Nerys-Junior; Lendel C Costa; Luciene P Braga-Dias; Márcia Oliveira; Atila D Rossi; Rodrigo Delvecchio da Cunha; Gabriel S Gonçalves; Amilcar Tanuri
Journal:  Genet Mol Biol       Date:  2013-02-28       Impact factor: 1.771

9.  Targeted gene suppression by inducing de novo DNA methylation in the gene promoter.

Authors:  Ai-Niu Ma; Hong Wang; Rui Guo; Yong-Xiang Wang; Wei Li; Jiuwei Cui; Guanjun Wang; Andrew R Hoffman; Ji-Fan Hu
Journal:  Epigenetics Chromatin       Date:  2014-08-18       Impact factor: 4.954

10.  The CRISPR/Cas9 System Facilitates Clearance of the Intrahepatic HBV Templates In Vivo.

Authors:  Su-Ru Lin; Hung-Chih Yang; Yi-Ting Kuo; Chun-Jen Liu; Ta-Yu Yang; Ku-Chun Sung; You-Yu Lin; Hurng-Yi Wang; Chih-Chiang Wang; Yueh-Chi Shen; Fang-Yi Wu; Jia-Horng Kao; Ding-Shinn Chen; Pei-Jer Chen
Journal:  Mol Ther Nucleic Acids       Date:  2014-08-19       Impact factor: 10.183

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