Literature DB >> 2308837

Chloroplast genes transferred to the nuclear plant genome have adjusted to nuclear base composition and codon usage.

J L Oliver1, A Marín, J M Martínez-Zapater.   

Abstract

During plant evolution, some plastid genes have been moved to the nuclear genome. These transferred genes are now correctly expressed in the nucleus, their products being transported into the chloroplast. We compared the base compositions, the distributions of some dinucleotides and codon usages of transferred, nuclear and chloroplast genes in two dicots and two monocots plant species. Our results indicate that transferred genes have adjusted to nuclear base composition and codon usage, being now more similar to the nuclear genes than to the chloroplast ones in every species analyzed.

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Year:  1990        PMID： 2308837      PMCID： PMC330204          DOI： 10.1093/nar/18.1.65

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  37 in total

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Journal:  Nucleic Acids Res       Date:  1989-01-25       Impact factor: 16.971

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Journal:  J Mol Biol       Date:  1989-04-05       Impact factor: 5.469

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Journal:  Nucleic Acids Res       Date:  1986-08-26       Impact factor: 16.971

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Authors:  K H Wolfe; P M Sharp; W H Li
Journal:  Nature       Date:  1989-01-19       Impact factor: 49.962

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Journal:  Science       Date:  1966-09-09       Impact factor: 47.728

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Authors:  G P Holmquist
Journal:  J Mol Evol       Date:  1989-06       Impact factor: 2.395

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Journal:  Proc Natl Acad Sci U S A       Date:  1988-12       Impact factor: 11.205
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  10 in total

1.  A comparison of evolutionary rates of the two major kinds of superoxide dismutase.

Authors:  M W Smith; R F Doolittle
Journal:  J Mol Evol       Date:  1992-02       Impact factor: 2.395

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Authors:  Michael Hackenberg; Pedro Bernaola-Galván; Pedro Carpena; José L Oliver
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3.  Targeting a nuclear anthranilate synthase alpha-subunit gene to the tobacco plastid genome results in enhanced tryptophan biosynthesis. Return of a gene to its pre-endosymbiotic origin.

Authors:  X H Zhang; J E Brotherton; J M Widholm; A R Portis
Journal:  Plant Physiol       Date:  2001-09       Impact factor: 8.340

4.  Intercodon dinucleotides affect codon choice in plant genes.

Authors:  F De Amicis; S Marchetti
Journal:  Nucleic Acids Res       Date:  2000-09-01       Impact factor: 16.971

5.  A homolog of Escherichia coli RecA protein in plastids of higher plants.

Authors:  H Cerutti; M Osman; P Grandoni; A T Jagendorf
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-01       Impact factor: 11.205

6.  Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C and G-ending codons.

Authors:  S L Fennoy; J Bailey-Serres
Journal:  Nucleic Acids Res       Date:  1993-11-25       Impact factor: 16.971

7.  Chloroplastic genomes of Ginkgo biloba and Chlamydomonas moewusii contain a chlB gene encoding one subunit of a light-independent protochlorophyllide reductase.

Authors:  M Richard; C Tremblay; G Bellemare
Journal:  Curr Genet       Date:  1994-08       Impact factor: 3.886

8.  Transfer of rpl22 to the nucleus greatly preceded its loss from the chloroplast and involved the gain of an intron.

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Journal:  EMBO J       Date:  1991-10       Impact factor: 11.598

Review 9.  Strategies for complete plastid genome sequencing.

Authors:  Alex D Twyford; Rob W Ness
Journal:  Mol Ecol Resour       Date:  2016-11-28       Impact factor: 7.090

10.  A functional investigation of the suppression of CpG and UpA dinucleotide frequencies in plant RNA virus genomes.

Authors:  Ahmad Ibrahim; Jelke Fros; Andre Bertran; Ferdyansyah Sechan; Valerie Odon; Leslie Torrance; Richard Kormelink; Peter Simmonds
Journal:  Sci Rep       Date:  2019-12-04       Impact factor: 4.379
  10 in total

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