Literature DB >> 23087115

Complete genome sequence of temperate bacteriophage AcaML1 from the extreme acidophile Acidithiobacillus caldus ATCC 51756.

Pablo Tapia1, Francisco Moya Flores, Paulo C Covarrubias, Lillian G Acuña, David S Holmes, Raquel Quatrini.   

Abstract

Development of reproducible genetic tools in the industrially important acidithiobacilli is urgently required. Inducible temperate phages which may be modified in vitro, propagated in suitable hosts, and used to transduce relevant genetic information to other strains and/or species are potentially valuable tools in this field of research. In order to address these current limitations, the genome sequence of an inducible temperate Myoviridae-like bacteriophage from the Acidithiobacillus caldus type strain was annotated and analyzed bioinformatically. Here, we announce the genome sequence of AcaML1 and report major findings from its annotation.

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Year:  2012        PMID: 23087115      PMCID: PMC3486464          DOI: 10.1128/JVI.02261-12

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  9 in total

Review 1.  Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution.

Authors:  I Kobayashi
Journal:  Nucleic Acids Res       Date:  2001-09-15       Impact factor: 16.971

Review 2.  The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia.

Authors:  Douglas E Rawlings; D Barrie Johnson
Journal:  Microbiology       Date:  2007-02       Impact factor: 2.777

Review 3.  Protein repertoire of double-stranded DNA bacteriophages.

Authors:  Jing Liu; Galina Glazko; Arcady Mushegian
Journal:  Virus Res       Date:  2006-02-21       Impact factor: 3.303

4.  Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the genus Acidithiobacillus.

Authors:  Jorge Valdes; Raquel Quatrini; Kevin Hallberg; Mark Dopson; Pablo D T Valenzuela; David S Holmes
Journal:  J Bacteriol       Date:  2009-07-17       Impact factor: 3.490

5.  Draft genome of the psychrotolerant acidophile Acidithiobacillus ferrivorans SS3.

Authors:  Maria Liljeqvist; Jorge Valdes; David S Holmes; Mark Dopson
Journal:  J Bacteriol       Date:  2011-06-24       Impact factor: 3.490

6.  Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.

Authors:  H Tettelin; K E Nelson; I T Paulsen; J A Eisen; T D Read; S Peterson; J Heidelberg; R T DeBoy; D H Haft; R J Dodson; A S Durkin; M Gwinn; J F Kolonay; W C Nelson; J D Peterson; L A Umayam; O White; S L Salzberg; M R Lewis; D Radune; E Holtzapple; H Khouri; A M Wolf; T R Utterback; C L Hansen; L A McDonald; T V Feldblyum; S Angiuoli; T Dickinson; E K Hickey; I E Holt; B J Loftus; F Yang; H O Smith; J C Venter; B A Dougherty; D A Morrison; S K Hollingshead; C M Fraser
Journal:  Science       Date:  2001-07-20       Impact factor: 47.728

7.  Draft genome sequence of the extremely acidophilic biomining bacterium Acidithiobacillus thiooxidans ATCC 19377 provides insights into the evolution of the Acidithiobacillus genus.

Authors:  Jorge Valdes; Francisco Ossandon; Raquel Quatrini; Mark Dopson; David S Holmes
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

8.  Evidence for horizontal transfer of the EcoT38I restriction-modification gene to chromosomal DNA by the P2 phage and diversity of defective P2 prophages in Escherichia coli TH38 strains.

Authors:  Keiko Kita; Hideaki Kawakami; Hiroaki Tanaka
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

9.  Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.

Authors:  Jorge Valdés; Inti Pedroso; Raquel Quatrini; Robert J Dodson; Herve Tettelin; Robert Blake; Jonathan A Eisen; David S Holmes
Journal:  BMC Genomics       Date:  2008-12-11       Impact factor: 3.969

  9 in total
  8 in total

1.  Identification and characterization of ϕH111-1: A novel myovirus with broad activity against clinical isolates of Burkholderia cenocepacia.

Authors:  Karlene H Lynch; Yongjie Liang; Leo Eberl; David S Wishart; Jonathan J Dennis
Journal:  Bacteriophage       Date:  2013-10-01

2.  Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus.

Authors:  Lillian G Acuña; Juan Pablo Cárdenas; Paulo C Covarrubias; Juan José Haristoy; Rodrigo Flores; Harold Nuñez; Gonzalo Riadi; Amir Shmaryahu; Jorge Valdés; Mark Dopson; Douglas E Rawlings; Jillian F Banfield; David S Holmes; Raquel Quatrini
Journal:  PLoS One       Date:  2013-11-08       Impact factor: 3.240

3.  Life-style and genome structure of marine Pseudoalteromonas siphovirus B8b isolated from the northwestern Mediterranean Sea.

Authors:  Elena Lara; Karin Holmfeldt; Natalie Solonenko; Elisabet Laia Sà; J Cesar Ignacio-Espinoza; Francisco M Cornejo-Castillo; Nathan C Verberkmoes; Dolors Vaqué; Matthew B Sullivan; Silvia G Acinas
Journal:  PLoS One       Date:  2015-01-14       Impact factor: 3.240

Review 4.  Endogenous and Foreign Nucleoid-Associated Proteins of Bacteria: Occurrence, Interactions and Effects on Mobile Genetic Elements and Host's Biology.

Authors:  Rodrigo Flores-Ríos; Raquel Quatrini; Alejandra Loyola
Journal:  Comput Struct Biotechnol J       Date:  2019-06-14       Impact factor: 7.271

Review 5.  Viruses in Extreme Environments, Current Overview, and Biotechnological Potential.

Authors:  Jose F Gil; Victoria Mesa; Natalia Estrada-Ortiz; Mauricio Lopez-Obando; Andrés Gómez; Jersson Plácido
Journal:  Viruses       Date:  2021-01-08       Impact factor: 5.048

6.  Integrative Assessments on Molecular Taxonomy of Acidiferrobacter thiooxydans ZJ and Its Environmental Adaptation Based on Mobile Genetic Elements.

Authors:  Liyuan Ma; Weiyi Yang; Shanshan Huang; Rui Liu; Huiying Li; Xinping Huang; Junming Xiong; Xueduan Liu
Journal:  Front Microbiol       Date:  2022-02-16       Impact factor: 5.640

7.  Genome Study of a Novel Virulent Phage vB_SspS_KASIA and Mu-like Prophages of Shewanella sp. M16 Provides Insights into the Genetic Diversity of the Shewanella Virome.

Authors:  Katarzyna Bujak; Przemyslaw Decewicz; Joanna M Rosinska; Monika Radlinska
Journal:  Int J Mol Sci       Date:  2021-10-14       Impact factor: 5.923

Review 8.  Prohead RNA: a noncoding viral RNA of novel structure and function.

Authors:  Alyssa C Hill; Laura E Bartley; Susan J Schroeder
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-01-25       Impact factor: 9.957

  8 in total

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