Literature DB >> 19617360

Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the genus Acidithiobacillus.

Jorge Valdes1, Raquel Quatrini, Kevin Hallberg, Mark Dopson, Pablo D T Valenzuela, David S Holmes.   

Abstract

Acidithiobacillus caldus is an extremely acidophilic, moderately thermophilic, chemolithoautotrophic gammaproteobacterium that derives energy from the oxidation of sulfur and reduced inorganic sulfur compounds. Here we present the draft genome sequence of Acidithiobacillus caldus ATCC 51756 (the type strain of the species), which has permitted the prediction of genes for survival in extremely acidic environments, including genes for sulfur oxidation and nutrient assimilation.

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Year:  2009        PMID： 19617360      PMCID： PMC2737959          DOI： 10.1128/JB.00843-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  19 in total

Review 1.  A challenge for 21st century molecular biology and biochemistry: what are the causes of obligate autotrophy and methanotrophy?

Authors:  Ann P Wood; Jukka P Aurikko; Donovan P Kelly
Journal:  FEMS Microbiol Rev       Date:  2004-06       Impact factor: 16.408

2.  Assembling genomic DNA sequences with PHRAP.

Authors:  Melissa de la Bastide; W Richard McCombie
Journal:  Curr Protoc Bioinformatics       Date:  2007-03

3.  Functional analysis of gapped microbial genomes: amino acid metabolism of Thiobacillus ferrooxidans.

Authors:  E Selkov; R Overbeek; Y Kogan; L Chu; V Vonstein; D Holmes; S Silver; R Haselkorn; M Fonstein
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

4.  Regulation of a novel Acidithiobacillus caldus gene cluster involved in metabolism of reduced inorganic sulfur compounds.

Authors:  Olena I Rzhepishevska; Jorge Valdés; Liucija Marcinkeviciene; Camelia Algora Gallardo; Rolandas Meskys; Violaine Bonnefoy; David S Holmes; Mark Dopson
Journal:  Appl Environ Microbiol       Date:  2007-09-14       Impact factor: 4.792

5.  Apparent redundancy of electron transfer pathways via bc(1) complexes and terminal oxidases in the extremophilic chemolithoautotrophic Acidithiobacillus ferrooxidans.

Authors:  G Brasseur; G Levican; V Bonnefoy; D Holmes; E Jedlicki; D Lemesle-Meunier
Journal:  Biochim Biophys Acta       Date:  2004-06-07

6.  Microbial ecology of an extreme acidic environment, the Tinto River.

Authors:  E González-Toril; E Llobet-Brossa; E O Casamayor; R Amann; R Amils
Journal:  Appl Environ Microbiol       Date:  2003-08       Impact factor: 4.792

7.  Characteristics and adaptability of iron- and sulfur-oxidizing microorganisms used for the recovery of metals from minerals and their concentrates.

Authors:  Douglas E Rawlings
Journal:  Microb Cell Fact       Date:  2005-05-06       Impact factor: 5.328

8.  Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans.

Authors:  Raquel Quatrini; Claudia Lefimil; Felipe A Veloso; Inti Pedroso; David S Holmes; Eugenia Jedlicki
Journal:  Nucleic Acids Res       Date:  2007-03-13       Impact factor: 16.971

9.  Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.

Authors:  Jorge Valdés; Inti Pedroso; Raquel Quatrini; Robert J Dodson; Herve Tettelin; Robert Blake; Jonathan A Eisen; David S Holmes
Journal:  BMC Genomics       Date:  2008-12-11       Impact factor: 3.969

10.  Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations.

Authors:  Gloria Levicán; Juan A Ugalde; Nicole Ehrenfeld; Alejandro Maass; Pilar Parada
Journal:  BMC Genomics       Date:  2008-12-03       Impact factor: 3.969
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  35 in total

1.  Uncultured archaea dominate in the thermal groundwater of Uzon Caldera, Kamchatka.

Authors:  Andrey V Mardanov; Vadim M Gumerov; Alexey V Beletsky; Anna A Perevalova; Gennady A Karpov; Elizaveta A Bonch-Osmolovskaya; Nikolai V Ravin
Journal:  Extremophiles       Date:  2011-04-22       Impact factor: 2.395

2.  Complete genome sequence of temperate bacteriophage AcaML1 from the extreme acidophile Acidithiobacillus caldus ATCC 51756.

Authors:  Pablo Tapia; Francisco Moya Flores; Paulo C Covarrubias; Lillian G Acuña; David S Holmes; Raquel Quatrini
Journal:  J Virol       Date:  2012-11       Impact factor: 5.103

3.  RubisCO gene clusters found in a metagenome microarray from acid mine drainage.

Authors:  Xue Guo; Huaqun Yin; Jing Cong; Zhimin Dai; Yili Liang; Xueduan Liu
Journal:  Appl Environ Microbiol       Date:  2013-01-18       Impact factor: 4.792

4.  Draft genome of the psychrotolerant acidophile Acidithiobacillus ferrivorans SS3.

Authors:  Maria Liljeqvist; Jorge Valdes; David S Holmes; Mark Dopson
Journal:  J Bacteriol       Date:  2011-06-24       Impact factor: 3.490

5.  Draft genome sequence of the extremely acidophilic biomining bacterium Acidithiobacillus thiooxidans ATCC 19377 provides insights into the evolution of the Acidithiobacillus genus.

Authors:  Jorge Valdes; Francisco Ossandon; Raquel Quatrini; Mark Dopson; David S Holmes
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

6.  Multiple horizontal gene transfers of ammonium transporters/ammonia permeases from prokaryotes to eukaryotes: toward a new functional and evolutionary classification.

Authors:  Tami R McDonald; Fred S Dietrich; François Lutzoni
Journal:  Mol Biol Evol       Date:  2011-06-16       Impact factor: 16.240

7.  Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm.

Authors:  Daniel S Jones; Heidi L Albrecht; Katherine S Dawson; Irene Schaperdoth; Katherine H Freeman; Yundan Pi; Ann Pearson; Jennifer L Macalady
Journal:  ISME J       Date:  2011-06-30       Impact factor: 10.302

8.  Automated Microscopic Analysis of Metal Sulfide Colonization by Acidophilic Microorganisms.

Authors:  Sören Bellenberg; Antoine Buetti-Dinh; Vanni Galli; Olga Ilie; Malte Herold; Stephan Christel; Mariia Boretska; Igor V Pivkin; Paul Wilmes; Wolfgang Sand; Mario Vera; Mark Dopson
Journal:  Appl Environ Microbiol       Date:  2018-10-01       Impact factor: 4.792

9.  Tetrathionate-forming thiosulfate dehydrogenase from the acidophilic, chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans.

Authors:  Mei Kikumoto; Shohei Nogami; Tadayoshi Kanao; Jun Takada; Kazuo Kamimura
Journal:  Appl Environ Microbiol       Date:  2012-10-12       Impact factor: 4.792

10.  Evaluation of temperature, pH and nutrient conditions in bacterial growth and extracellular hydrolytic activities of two Alicyclobacillus spp. strains.

Authors:  Lourdes Yaret Ortiz-Cortés; Lucía María Cristina Ventura-Canseco; Miguel Abud-Archila; Víctor Manuel Ruíz-Valdiviezo; Irving Oswaldo Velázquez-Ríos; Peggy Elizabeth Alvarez-Gutiérrez
Journal:  Arch Microbiol       Date:  2021-06-22       Impact factor: 2.552
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