Literature DB >> 23085918

Impact of the optical depth of field on cytogenetic image quality.

Yuchen Qiu1, Xiaodong Chen, Yuhua Li, Bin Zheng, Shibo Li, Wei R Chen, Hong Liu.   

Abstract

In digital pathology, clinical specimen slides are converted into digital images by microscopic image scanners. Since random vibration and mechanical drifting are unavoidable on even high-precision moving stages, the optical depth of field (DOF) of microscopic systems may affect image quality, in particular when using an objective lens with high magnification power. The DOF of a microscopic system was theoretically analyzed and experimentally validated using standard resolution targets under 60× dry and 100× oil objective lenses, respectively. Then cytogenetic samples were imaged at in-focused and off-focused states to analyze the impact of DOF on the acquired image qualities. For the investigated system equipped with the 60× dry and 100× oil objective lenses, the theoretical estimation of the DOF are 0.855 μm and 0.703 μm, and the measured DOF are 3.0 μm and 1.8 μm, respectively. The observation reveals that the chromosomal bands of metaphase cells are distinguishable when images are acquired up to approximately 1.5 μm or 1 μm out of focus using the 60× dry and 100× oil objective lenses, respectively. The results of this investigation provide important designing trade-off parameters to optimize the digital microscopic image scanning systems in the future.

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Year:  2012        PMID: 23085918      PMCID: PMC3444261          DOI: 10.1117/1.JBO.17.9.096017

Source DB:  PubMed          Journal:  J Biomed Opt        ISSN: 1083-3668            Impact factor:   3.170


  12 in total

1.  Spherical and irregular aberrations are important for the optimal performance of the human eye.

Authors:  Y K Nio; N M Jansonius; V Fidler; E Geraghty; S Norrby; A C Kooijman
Journal:  Ophthalmic Physiol Opt       Date:  2002-03       Impact factor: 3.117

2.  [Study of somatic chromosomes from 9 mongoloid children].

Authors:  J LEJEUNE; M GAUTIER; R TURPIN
Journal:  C R Hebd Seances Acad Sci       Date:  1959-03-16

3.  Defocused transfer function for a partially coherent microscope and application to phase retrieval.

Authors:  Colin J R Sheppard
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2004-05       Impact factor: 2.129

4.  Method for the measurement of the modulation transfer function of sampled imaging systems from bar-target patterns.

Authors:  D N Sitter; J S Goddard; R K Ferrell
Journal:  Appl Opt       Date:  1995-02-01       Impact factor: 1.980

5.  Modulation Transfer Function Measurement Using Three- and Four-bar Targets.

Authors:  G D Boreman; S Yang
Journal:  Appl Opt       Date:  1995-12-01       Impact factor: 1.980

6.  Asymptotic behavior of the spatial frequency response of an optical system with defocus and spherical aberration.

Authors:  Aleksey N Simonov; Michiel C Rombach
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2010-12-01       Impact factor: 2.129

7.  Two-dimensional modulation transfer function: a new perspective.

Authors:  Emanuel Marom; Benjamin Milgrom; Naim Konforti
Journal:  Appl Opt       Date:  2010-12-10       Impact factor: 1.980

8.  Calculation of the modulation transfer function for object brightness distribution function oriented along any direction in axis-symmetrical optical systems.

Authors:  Psang Dain Lin; Wei Wu
Journal:  Appl Opt       Date:  2011-06-10       Impact factor: 1.980

9.  Automated fluorescent in situ hybridization (FISH) analysis of t(9;22)(q34;q11) in interphase nuclei.

Authors:  Béla Kajtár; Gábor Méhes; Thomas Lörch; Linda Deák; Marika Kneifné; Donát Alpár; László Pajor
Journal:  Cytometry A       Date:  2006-06       Impact factor: 4.355

10.  Quantitative fish determination of chromosome 3 arm imbalances in lung tumors by automated image cytometry.

Authors:  Khuong Truong; Anne Gibaud; Gérard Zalcman; Marie Noëlle Guilly; Martine Antoine; Frédéric Commo; Coralie Fouquet; Jacques Cadranel; Thierry Soussi; Bernard Dutrillaux; Bernard Malfoy
Journal:  Med Sci Monit       Date:  2004-10-26
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  2 in total

Review 1.  Imaging live cells at the nanometer-scale with single-molecule microscopy: obstacles and achievements in experiment optimization for microbiology.

Authors:  Beth L Haas; Jyl S Matson; Victor J DiRita; Julie S Biteen
Journal:  Molecules       Date:  2014-08-13       Impact factor: 4.411

2.  Using Fourier ptychography microscopy to achieve high-resolution chromosome imaging: an initial evaluation.

Authors:  Ke Zhang; Xianglan Lu; Xuxin Chen; Roy Zhang; Kar-Ming Fung; Hong Liu; Bin Zheng; Shibo Li; Yuchen Qiu
Journal:  J Biomed Opt       Date:  2022-01       Impact factor: 3.758

  2 in total

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