Literature DB >> 23084930

When secondary comes first--the importance of non-canonical DNA structures.

Natalie Saini1, Yu Zhang, Karen Usdin, Kirill S Lobachev.   

Abstract

Secondary structure-forming DNA motifs have achieved infamy because of their association with a variety of human diseases and cancer. The 3rd FASEB summer conference on dynamic DNA structures focused on the mechanisms responsible for the instabilities inherent to repetitive DNA and presented many exciting and novel aspects related to the metabolism of secondary structures. In addition, the meeting encompassed talks and posters on the dynamic structures that are generated during DNA metabolism including nicked DNA, Holliday junctions and RNA:DNA hybrids. New approaches for analysis and sequencing technologies put forth secondary structures and other DNA intermediates as vital regulators of a variety of cellular processes that contribute to evolution, polymorphisms and diseases.
Copyright © 2012 Elsevier Masson SAS. All rights reserved.

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Year:  2012        PMID: 23084930      PMCID: PMC3557592          DOI: 10.1016/j.biochi.2012.10.005

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  10 in total

1.  Helix formation by guanylic acid.

Authors:  M GELLERT; M N LIPSETT; D R DAVIES
Journal:  Proc Natl Acad Sci U S A       Date:  1962-12-15       Impact factor: 11.205

2.  Formation of pearl-necklace monomorphic G-quadruplexes in the human CEB25 minisatellite.

Authors:  Samir Amrane; Michael Adrian; Brahim Heddi; Alexandre Serero; Alain Nicolas; Jean-Louis Mergny; Anh Tuân Phan
Journal:  J Am Chem Soc       Date:  2012-03-26       Impact factor: 15.419

Review 3.  Structure, location and interactions of G-quadruplexes.

Authors:  Julian L Huppert
Journal:  FEBS J       Date:  2010-07-29       Impact factor: 5.542

4.  Dynamic roles for G4 DNA in the biology of eukaryotic cells.

Authors:  Nancy Maizels
Journal:  Nat Struct Mol Biol       Date:  2006-12       Impact factor: 15.369

Review 5.  Trinucleotide repeats associated with human disease.

Authors:  M Mitas
Journal:  Nucleic Acids Res       Date:  1997-06-15       Impact factor: 16.971

6.  The complete genome sequence of the gram-positive bacterium Bacillus subtilis.

Authors:  F Kunst; N Ogasawara; I Moszer; A M Albertini; G Alloni; V Azevedo; M G Bertero; P Bessières; A Bolotin; S Borchert; R Borriss; L Boursier; A Brans; M Braun; S C Brignell; S Bron; S Brouillet; C V Bruschi; B Caldwell; V Capuano; N M Carter; S K Choi; J J Cordani; I F Connerton; N J Cummings; R A Daniel; F Denziot; K M Devine; A Düsterhöft; S D Ehrlich; P T Emmerson; K D Entian; J Errington; C Fabret; E Ferrari; D Foulger; C Fritz; M Fujita; Y Fujita; S Fuma; A Galizzi; N Galleron; S Y Ghim; P Glaser; A Goffeau; E J Golightly; G Grandi; G Guiseppi; B J Guy; K Haga; J Haiech; C R Harwood; A Hènaut; H Hilbert; S Holsappel; S Hosono; M F Hullo; M Itaya; L Jones; B Joris; D Karamata; Y Kasahara; M Klaerr-Blanchard; C Klein; Y Kobayashi; P Koetter; G Koningstein; S Krogh; M Kumano; K Kurita; A Lapidus; S Lardinois; J Lauber; V Lazarevic; S M Lee; A Levine; H Liu; S Masuda; C Mauël; C Médigue; N Medina; R P Mellado; M Mizuno; D Moestl; S Nakai; M Noback; D Noone; M O'Reilly; K Ogawa; A Ogiwara; B Oudega; S H Park; V Parro; T M Pohl; D Portelle; S Porwollik; A M Prescott; E Presecan; P Pujic; B Purnelle; G Rapoport; M Rey; S Reynolds; M Rieger; C Rivolta; E Rocha; B Roche; M Rose; Y Sadaie; T Sato; E Scanlan; S Schleich; R Schroeter; F Scoffone; J Sekiguchi; A Sekowska; S J Seror; P Serror; B S Shin; B Soldo; A Sorokin; E Tacconi; T Takagi; H Takahashi; K Takemaru; M Takeuchi; A Tamakoshi; T Tanaka; P Terpstra; A Togoni; V Tosato; S Uchiyama; M Vandebol; F Vannier; A Vassarotti; A Viari; R Wambutt; H Wedler; T Weitzenegger; P Winters; A Wipat; H Yamamoto; K Yamane; K Yasumoto; K Yata; K Yoshida; H F Yoshikawa; E Zumstein; H Yoshikawa; A Danchin
Journal:  Nature       Date:  1997-11-20       Impact factor: 49.962

7.  Trinucleotide repeats affect DNA replication in vivo.

Authors:  G M Samadashwily; G Raca; S M Mirkin
Journal:  Nat Genet       Date:  1997-11       Impact factor: 38.330

8.  MutSalpha binds to and promotes synapsis of transcriptionally activated immunoglobulin switch regions.

Authors:  Erik D Larson; Michelle L Duquette; W Jason Cummings; Raphael J Streiff; Nancy Maizels
Journal:  Curr Biol       Date:  2005-03-08       Impact factor: 10.834

9.  DNA methylation represses FMR-1 transcription in fragile X syndrome.

Authors:  J S Sutcliffe; D L Nelson; F Zhang; M Pieretti; C T Caskey; D Saxe; S T Warren
Journal:  Hum Mol Genet       Date:  1992-09       Impact factor: 6.150

10.  Friedreich's ataxia: autosomal recessive disease caused by an intronic GAA triplet repeat expansion.

Authors:  V Campuzano; L Montermini; M D Moltò; L Pianese; M Cossée; F Cavalcanti; E Monros; F Rodius; F Duclos; A Monticelli; F Zara; J Cañizares; H Koutnikova; S I Bidichandani; C Gellera; A Brice; P Trouillas; G De Michele; A Filla; R De Frutos; F Palau; P I Patel; S Di Donato; J L Mandel; S Cocozza; M Koenig; M Pandolfo
Journal:  Science       Date:  1996-03-08       Impact factor: 47.728

  10 in total
  21 in total

Review 1.  Close encounters: Moving along bumps, breaks, and bubbles on expanded trinucleotide tracts.

Authors:  Aris A Polyzos; Cynthia T McMurray
Journal:  DNA Repair (Amst)       Date:  2017-06-09

2.  Nonhomologous End-Joining with Minimal Sequence Loss Is Promoted by the Mre11-Rad50-Nbs1-Ctp1 Complex in Schizosaccharomyces pombe.

Authors:  Yanhui Li; Jinyu Wang; Gang Zhou; Michael Lajeunesse; Nga Le; Brittany N Stawicki; Yalitza Lopez Corcino; Kathleen L Berkner; Kurt W Runge
Journal:  Genetics       Date:  2017-03-14       Impact factor: 4.562

3.  Polarizable Molecular Dynamics Simulations of Two c-kit Oncogene Promoter G-Quadruplexes: Effect of Primary and Secondary Structure on Loop and Ion Sampling.

Authors:  Alexa M Salsbury; Tanner J Dean; Justin A Lemkul
Journal:  J Chem Theory Comput       Date:  2020-04-30       Impact factor: 6.006

Review 4.  Modulation of DNA structure formation using small molecules.

Authors:  Imee M A Del Mundo; Karen M Vasquez; Guliang Wang
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2019-09-03       Impact factor: 4.739

5.  Photocrosslinking of G-Quadruplex-Forming Sequences found in Human Promoters.

Authors:  Jillian E Smith-Carpenter; John-Stephen Taylor
Journal:  Photochem Photobiol       Date:  2018-09-26       Impact factor: 3.421

6.  Genetic Screens to Study GAA/TTC and Inverted Repeat Instability in Saccharomyces cerevisiae.

Authors:  Wenying Guo; Kirill S Lobachev
Journal:  Methods Mol Biol       Date:  2020

7.  i-Clamp phenoxazine for the fine tuning of DNA i-motif stability.

Authors:  Vladimir B Tsvetkov; Timofei S Zatsepin; Evgeny S Belyaev; Yury I Kostyukevich; George V Shpakovski; Victor V Podgorsky; Galina E Pozmogova; Anna M Varizhuk; Andrey V Aralov
Journal:  Nucleic Acids Res       Date:  2018-04-06       Impact factor: 16.971

Review 8.  Looked at life from both sides now.

Authors:  Jillian E Smith; Allisandra K Mowles; Anil K Mehta; David G Lynn
Journal:  Life (Basel)       Date:  2014-12-11

9.  The Effect of Small Cosolutes that Mimic Molecular Crowding Conditions on the Stability of Triplexes Involving Duplex DNA.

Authors:  Anna Aviñó; Stefania Mazzini; Raimundo Gargallo; Ramon Eritja
Journal:  Int J Mol Sci       Date:  2016-02-05       Impact factor: 5.923

Review 10.  Metal Cations in G-Quadruplex Folding and Stability.

Authors:  Debmalya Bhattacharyya; Gayan Mirihana Arachchilage; Soumitra Basu
Journal:  Front Chem       Date:  2016-09-09       Impact factor: 5.221

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