Literature DB >> 31586343

Genetic Screens to Study GAA/TTC and Inverted Repeat Instability in Saccharomyces cerevisiae.

Wenying Guo1, Kirill S Lobachev2.   

Abstract

Instability of trinucleotide and inverted repeats is a causative factor in the development of a number of neurological diseases, hereditary syndromes, and cancer. To understand the mechanisms that lead to repeat-induced genome destabilization it is important to identify factors that affect repeat metabolism. Here we present an approach that utilizes systematic and unbiased genome-wide screen in yeast Saccharomyces cerevisiae aimed to find genes that govern GAA/TTC and inverted repeat instability. These screens allowed for the identification of more than 30 mutants with increased fragility of both repeat motifs.

Entities:  

Keywords:  Double-strand breaks; Genome instability; Genome-wide screen; Gross chromosomal rearrangements; Inverted repeats; Trinucleotide repeats

Year:  2020        PMID: 31586343      PMCID: PMC7098163          DOI: 10.1007/978-1-4939-9784-8_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  17 in total

1.  Mutator genes for suppression of gross chromosomal rearrangements identified by a genome-wide screening in Saccharomyces cerevisiae.

Authors:  Stephanie Smith; Ji-Young Hwang; Soma Banerjee; Anju Majeed; Amitabha Gupta; Kyungjaem Myung
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-07       Impact factor: 11.205

2.  Replication stalling at Friedreich's ataxia (GAA)n repeats in vivo.

Authors:  Maria M Krasilnikova; Sergei M Mirkin
Journal:  Mol Cell Biol       Date:  2004-03       Impact factor: 4.272

3.  In vivo site-directed mutagenesis using oligonucleotides.

Authors:  F Storici; L K Lewis; M A Resnick
Journal:  Nat Biotechnol       Date:  2001-08       Impact factor: 54.908

4.  Systematic genetic analysis with ordered arrays of yeast deletion mutants.

Authors:  A H Tong; M Evangelista; A B Parsons; H Xu; G D Bader; N Pagé; M Robinson; S Raghibizadeh; C W Hogue; H Bussey; B Andrews; M Tyers; C Boone
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

5.  Inverted Alu repeats unstable in yeast are excluded from the human genome.

Authors:  K S Lobachev; J E Stenger; O G Kozyreva; J Jurka; D A Gordenin; M A Resnick
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

6.  Gross chromosomal rearrangements in Saccharomyces cerevisiae replication and recombination defective mutants.

Authors:  C Chen; R D Kolodner
Journal:  Nat Genet       Date:  1999-09       Impact factor: 38.330

7.  The Mre11 complex is required for repair of hairpin-capped double-strand breaks and prevention of chromosome rearrangements.

Authors:  Kirill S Lobachev; Dmitry A Gordenin; Michael A Resnick
Journal:  Cell       Date:  2002-01-25       Impact factor: 41.582

8.  Cycloheximide resistance in yeast: the gene and its protein.

Authors:  N F Käufer; H M Fried; W F Schwindinger; M Jasin; J R Warner
Journal:  Nucleic Acids Res       Date:  1983-05-25       Impact factor: 16.971

9.  Genome-wide screen identifies pathways that govern GAA/TTC repeat fragility and expansions in dividing and nondividing yeast cells.

Authors:  Yu Zhang; Alexander A Shishkin; Yuri Nishida; Dana Marcinkowski-Desmond; Natalie Saini; Kirill V Volkov; Sergei M Mirkin; Kirill S Lobachev
Journal:  Mol Cell       Date:  2012-09-06       Impact factor: 17.970

10.  Genome-wide screen reveals replication pathway for quasi-palindrome fragility dependent on homologous recombination.

Authors:  Yu Zhang; Natalie Saini; Ziwei Sheng; Kirill S Lobachev
Journal:  PLoS Genet       Date:  2013-12-05       Impact factor: 5.917

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