Literature DB >> 20670279

Structure, location and interactions of G-quadruplexes.

Julian L Huppert1.   

Abstract

Four-stranded G-rich DNA structures called G-quadruplexes have been the subject of increasing interest recently. Experimental and computational techniques have been used to implicate them in important biological processes such as transcription and translation. In this minireview, I discuss how they form, what structures they adopt and with what stability. I then discuss the computational approaches used to predict them on a genomic scale and how the information derived can be combined with experiments to understand their biological functions. Other minireviews in this series deal with G-quadruplex nucleic acids and human disease [Wu Y & Brosh RM Jr (2010) FEBS J] and making sense of G-quadruplex and i-motif function in oncogene promoters [Brooks TA et al. (2010) FEBS J].

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Year:  2010        PMID: 20670279     DOI: 10.1111/j.1742-4658.2010.07758.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  81 in total

1.  Comparative investigation of the genomic regions involved in antigenic variation of the TprK antigen among treponemal species, subspecies, and strains.

Authors:  Lorenzo Giacani; Stephanie L Brandt; Maritza Puray-Chavez; Tara Brinck Reid; Charmie Godornes; Barbara J Molini; Martin Benzler; Jörg S Hartig; Sheila A Lukehart; Arturo Centurion-Lara
Journal:  J Bacteriol       Date:  2012-06-01       Impact factor: 3.490

2.  Moving beyond Watson-Crick models of coarse grained DNA dynamics.

Authors:  Margaret C Linak; Richard Tourdot; Kevin D Dorfman
Journal:  J Chem Phys       Date:  2011-11-28       Impact factor: 3.488

3.  Translational repression of the disintegrin and metalloprotease ADAM10 by a stable G-quadruplex secondary structure in its 5'-untranslated region.

Authors:  Sven Lammich; Frits Kamp; Judith Wagner; Brigitte Nuscher; Sonja Zilow; Ann-Katrin Ludwig; Michael Willem; Christian Haass
Journal:  J Biol Chem       Date:  2011-11-07       Impact factor: 5.157

4.  Guanine Quadruplex DNA Regulates Gamma Radiation Response of Genome Functions in the Radioresistant Bacterium Deinococcus radiodurans.

Authors:  Shruti Mishra; Reema Chaudhary; Sudhir Singh; Swathi Kota; Hari S Misra
Journal:  J Bacteriol       Date:  2019-08-08       Impact factor: 3.490

5.  The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment.

Authors:  Subhajyoti De; Brent S Pedersen; Katerina Kechris
Journal:  Brief Bioinform       Date:  2013-08-16       Impact factor: 11.622

6.  G-Quadruplex in the NRF2 mRNA 5' Untranslated Region Regulates De Novo NRF2 Protein Translation under Oxidative Stress.

Authors:  Sang C Lee; Jack Zhang; Josh Strom; Danzhou Yang; Thai Nho Dinh; Kyle Kappeler; Qin M Chen
Journal:  Mol Cell Biol       Date:  2016-12-19       Impact factor: 4.272

Review 7.  G-quadruplex nucleic acids and human disease.

Authors:  Yuliang Wu; Robert M Brosh
Journal:  FEBS J       Date:  2010-07-29       Impact factor: 5.542

Review 8.  Making sense of G-quadruplex and i-motif functions in oncogene promoters.

Authors:  Tracy A Brooks; Samantha Kendrick; Laurence Hurley
Journal:  FEBS J       Date:  2010-07-29       Impact factor: 5.542

9.  DNA secondary structures and epigenetic determinants of cancer genome evolution.

Authors:  Subhajyoti De; Franziska Michor
Journal:  Nat Struct Mol Biol       Date:  2011-07-03       Impact factor: 15.369

Review 10.  DNA secondary structures: stability and function of G-quadruplex structures.

Authors:  Matthew L Bochman; Katrin Paeschke; Virginia A Zakian
Journal:  Nat Rev Genet       Date:  2012-10-03       Impact factor: 53.242

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