| Literature DB >> 23083099 |
Panagiota-Aikaterini Geomela1, Christos K Kontos, Ioannis Yiotakis, Emmanuel G Fragoulis, Andreas Scorilas.
Abstract
BACKGROUND: Head and neck squamous cell carcinoma (HNSCC) represents one of the most commonly diagnosed malignancies worldwide. The DDC gene encodes L-DOPA decarboxylase, an enzyme catalyzing the decarboxylation of L-DOPA to dopamine. We have recently shown that DDC mRNA is a significant predictor of patients' prognosis in colorectal adenocarcinoma and prostate cancer. The aim of the current study was to analyze the DDC mRNA expression in HNSCC patients.Entities:
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Year: 2012 PMID: 23083099 PMCID: PMC3495033 DOI: 10.1186/1471-2407-12-484
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Primers used for real-time PCR amplification of and
| 5′-GAACAGACTTAACGGGAGCCTTT-3′ | 90 | 79.0 | |
| 5′-AATGCCGGTAGTCAGTGATAAGC-3′ | |||
| 5′-ATGGGGAAGGTGAAGGTCG-3′ | 107 | 79.4 | |
| 5′-GGGTCATTGATGGCAACAATATC-3′ |
Figure 1Relative quantification of mRNA expression in a laryngeal squamous cell carcinoma specimen, using qRT-PCR. (A) Amplification plots of DDC and GAPDH cDNAs, (B) dissociation curves of the respective amplicons, showing dRn plotted against cycle number, and (C) validation of the comparative Ct (2-ddCt) method, to evaluate the efficiency of DDC and GAPDH amplification.
mRNA expressionanalysis in patients with laryngeal or tongue tumors and their non-cancerous counterparts
| 17.50 ± 11.52 | 0.05 – 164.91 | 0.05 | 0.05 | 0.05 | 0.52 | 153.89 | |
| 44.02 ± 25.71 | 0.05 – 359.72 | 0.05 | 0.05 | 3.71 | 61.61 | 228.09 | |
| 7.43 ± 7.21 | 0.05 – 93.9 | 0.05 | 0.05 | 0.05 | 0.63 | 56.77 | |
| 24.55 ± 16.99 | 0.05 – 128.80 | 0.05 | 0.05 | 0.05 | 49.92 | 128.80 | |
a a.u.: arbitrary units.
b Standard error of the mean.
Distribution of mRNA expressionin head and neck squamous cell carcinomas and in non-cancerous counterparts
| Pharynx | 5.51 ± 4.66 | 0.20 | 0.05 – 23.98 | 4.21 ± 3.5 | 1.07 | 0.05 – 14.65 |
| Buccal mucosa | 2.71 ± 2.66 | 0.05 | 0.05 – 13.33 | - | - | - |
| Parotid glands | 2.23 ± 1.88 | 0.10 | 0.05 – 9.69 | 0.31 ± 0.26 | 0.05 | 0.05 – 1.07 |
| Nasal cavity | 0.39 ± 0.24 | 0.23 | 0.05 – 1.05 | 8.75 ± 8.69 | 0.05 | 0.05 – 26.13 |
a a.u.: arbitrary units.
b Standard error of the mean.
mRNA expressionanalysis in subgroups of LSCC patients, classified according to classical clinicopathological parameters
| Tumor size | ||||
| ≤ 2 cm | 8 | 40.95 ± 25.88 | 0.41 | 0.033c |
| > 2 cm | 11 | 0.42 ± 0.37 | 0.05 | |
| TNM stage | ||||
| I | 5 | 63.94 ± 39.01 | 0.52 | 0.027d |
| II | 3 | 2.65 ± 2.61 | 0.05 | |
| III | 11 | 0.42 ± 0.37 | 0.05 | |
| Histological grade | ||||
| I | 7 | 0.12 ± 0.07 | 0.05 | 0.46d |
| II | 6 | 28.22 ± 27.35 | 0.05 | |
| III | 6 | 27.03 ± 25.40 | 0.17 | |
a a.u.: arbitrary units.
b Standard error of the mean.
c Calculated using the Mann-Whitney U test.
d Calculated using the Kruskal-Wallis test.
mRNA expressionanalysis in subgroups of TSCC patients, classified according to classical clinicopathological parameters
| Tumor size | ||||
| ≤ 2 cm | 7 | 13.76 ± 3.36 | 0.26 | 0.028c |
| > 2 cm | 6 | 5.08 ± 0.02 | 0.05 | |
| TNM stage | ||||
| I | 3 | 31.73 ± 3.11 | 1.00 | 0.025d |
| II | 7 | 0.18 ± 0.13 | 0.05 | |
| III | 3 | 0.05 ± 0.003 | 0.05 | |
| Histological grade | ||||
| I | 5 | 0.24 ± 0.19 | 0.05 | 0.097d |
| II | 4 | 0.28 ± 0.23 | 0.05 | |
| III | 3 | 31.34 ± 31.29 | 0.05 | |
a a.u.: arbitrary units.
b Standard error of the mean.
c Calculated using the Mann-Whitney U test.
d Calculated using the Kruskal-Wallis test.