Literature DB >> 23082039

On existence of reporter strands in DNA-based graph structures.

Nataša Jonoska1, Nadrian C Seeman, Gang Wu.   

Abstract

Through self-assembly of branched junction molecules many different DNA structures (graphs) can be assembled. We show that every multigraph can be assembled by DNA such that there is a single strand that traces each edge in the graph at least once. This strand corresponds to a boundary component of a two-dimensional orientable surface that has the given graph as a deformation retract. This boundary component traverses every edge at least once, and it defines a circular path in the graph that "preserves the graph structure" and traverses each edge.

Entities:  

Year:  2008        PMID: 23082039      PMCID: PMC3472455          DOI: 10.1016/j.tcs.2008.12.004

Source DB:  PubMed          Journal:  Theor Comput Sci        ISSN: 0304-3975            Impact factor:   0.827


  7 in total

1.  Three dimensional DNA structures in computing.

Authors:  N Jonoska; S A Karl; M Saito
Journal:  Biosystems       Date:  1999-10       Impact factor: 1.973

2.  Self-assembly of irregular graphs whose edges are DNA helix axes.

Authors:  Phiset Sa-Ardyen; Natasha Jonoska; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2004-06-02       Impact factor: 15.419

3.  Synthesis from DNA of a molecule with the connectivity of a cube.

Authors:  J H Chen; N C Seeman
Journal:  Nature       Date:  1991-04-18       Impact factor: 49.962

4.  Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication.

Authors:  R P Goodman; I A T Schaap; C F Tardin; C M Erben; R M Berry; C F Schmidt; A J Turberfield
Journal:  Science       Date:  2005-12-09       Impact factor: 47.728

5.  Design and self-assembly of two-dimensional DNA crystals.

Authors:  E Winfree; F Liu; L A Wenzler; N C Seeman
Journal:  Nature       Date:  1998-08-06       Impact factor: 49.962

6.  Nucleic acid junctions and lattices.

Authors:  N C Seeman
Journal:  J Theor Biol       Date:  1982-11-21       Impact factor: 2.691

7.  A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron.

Authors:  William M Shih; Joel D Quispe; Gerald F Joyce
Journal:  Nature       Date:  2004-02-12       Impact factor: 49.962

  7 in total
  2 in total

1.  Computing by molecular self-assembly.

Authors:  Nataša Jonoska; Nadrian C Seeman
Journal:  Interface Focus       Date:  2012-02-08       Impact factor: 3.906

2.  Construction of a DNA nano-object directly demonstrates computation.

Authors:  Gang Wu; Natasha Jonoska; Nadrian C Seeman
Journal:  Biosystems       Date:  2009-07-14       Impact factor: 1.973

  2 in total

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