Andrew J Ballard1, Christoph Dellago. 1. Chemical Physics Program and Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742, USA. aballar1@umd.edu
Abstract
We investigate the solvent effects leading to dissociation of sodium chloride in water. Thermodynamic analysis reveals dissociation to be driven energetically and opposed entropically, with the loss in entropy due to an increasing number of solvent molecules entering the highly coordinated ionic solvation shell. We show through committor analysis that the ion-ion distance is an insufficient reaction coordinate, in agreement with previous findings. By application of committor analysis on various constrained solvent ensembles, we find that the dissociation event is generally sensitive to solvent fluctuations at long ranges, with both sterics and electrostatics of importance. The dynamics of the reaction reveal that solvent rearrangements leading to dissociation occur on time scales from 0.5 to 5 ps or longer, and that, near the transition state, inertial effects enhance the reaction probability of a given trajectory.
We investigate the solvent effects leading to dissociation of sodium chloride in water. Thermodynamic analysis reveals dissociation to be driven energetically and opposed entropically, with the loss in entropy due to an increasing number of solvent molecules entering the highly coordinated ionic solvation shell. We show through committor analysis that the ion-ion distance is an insufficient reaction coordinate, in agreement with previous findings. By application of committor analysis on various constrained solvent ensembles, we find that the dissociation event is generally sensitive to solvent fluctuations at long ranges, with both sterics and electrostatics of importance. The dynamics of the reaction reveal that solvent rearrangements leading to dissociation occur on time scales from 0.5 to 5 ps or longer, and that, near the transition state, inertial effects enhance the reaction probability of a given trajectory.
Characterizing the dynamics of rare events
is vital to the understanding
of large-scale structural changes that occur in many complex systems
in nature and technology. Rare events typically involve many cooperative
parts that act together in a complicated way along a transition from
one long-lived state to another, and the determination of the collective
variables responsible for the reaction dynamics can provide much insight
into the physical mechanism underlying a transition. In the best circumstance,
a reaction coordinate is found, a function of these
collective variables that alone is sufficient to track the progress
of a reaction. Unfortunately, finding an adequate description of the
reaction in terms of a reaction coordinate or even only identifying
the collective variables is a challenging task: not only is sampling
computationally demanding due to the rare nature of the transition,
but the reaction also proceeds through a high-dimensional phase space
and so it is often difficult to discern which variables promote the
transition. Despite many novel techniques for reaction analysis,[1,2] finding a good reaction coordinate remains a challenge for many
processes occurring in complex systems.In this paper, we investigate
the kinetic pathways leading to ionic
dissociation, in particular the dissociation of Na+Cl– in water. Microscopically, this system contains metastable
associated and dissociated states, separated by a free energy barrier
preventing frequent transitions. Along a reaction in which the ion
pair transitions between associated and dissociated states, a number
of system rearrangements must take place which crucially involve the
surrounding solvent molecules. The first simulations of this system
were performed by McCammon et al.[3,4] and Rey et
al.[5] who used umbrella sampling and constrained
solute simulations, respectively, to investigate solvent structure
and thermodynamic properties as the interionic distance rion = |rNa – rCl| is varied. More recent
work by Geissler et al.[6] employed transition
path sampling to study the reaction, showing under careful statistical
analysis that rion alone is a poor reaction
coordinate in describing dissociation, and that the surrounding solvent
must be taken into account in a good reaction coordinate. Despite
this work and others, a complete description of the solvent motion
leading to dissociation is missing. While the ultimate goal is to
find a reaction coordinate for the event, even a complete set of solvent
variables that jointly account for the dissociation process is still
unknown, and hence further investigation is needed.In the current
study, we shed some more light on water’s
unique role by investigating the thermodynamic and dynamical properties
of the dissociation reaction. Our main results are organized as follows.
After describing our model, we present a thermodynamic description
of the reaction in terms of competing thermodynamic driving forces,
showing that dissociation is an energetically favorable but entropically
unfavorable process. We argue that the decrease in solvent entropy
upon dissociation is due to an increasingly larger number of highly
coordinated solvent molecules in the first hydration shell as the
ions move apart. We then investigate the relative importance of various
system variables in promoting dissociation. As with previous studies,[6] we employ statistical analysis of dissociation
(committor) probabilities on data from various constrained ensembles:
For data with constrained rion, we verify
that rion is indeed important in the reaction
but does not capture the entire mechanism, in confirmation with earlier
studies.[6] Various solvent degrees of freedom
are then constrained to pinpoint the range over which the solvent
influences the dissociation event. We then investigate various dynamical
aspects of dissociation, highlighting time scales under which solvent
rearrangements occur which drive dissociation, and the importance
of inertial effects near the transition state. Finally, our results
are summarized and discussed.
Model
The system we studied consists of one Na+ ion and one
Cl– ion immersed in a bath of Nw = 216 water molecules. The ion pair and ion–water
interactions were modeled using the OPLS force field,[7] which includes short-ranged Lennard-Jones and long-ranged
Coulomb terms. More specifically, the ion–ion interaction is
given bywhere e is the elementary
charge, ε0 is the permittivity of free space, and
Lennard-Jones parameters for the ion pair are σion = 3.8355 Å and ε = 0.075 603 420 1
kJ/mol. The water molecules interact via the rigid TIP4P model.[8] Calculations of the long-ranged electrostatic
forces from periodic boundary conditions were handled with particle
mesh Ewald summation. The simulations were performed at a constant
temperature of T = 300 K and constant volume of V = (18.64 Å)3, which was chosen from an
equilibrated constant-pressure simulation under ambient conditions.
To sample the NVT ensemble, the system evolved under Langevin dynamics
with a friction coefficient corresponding to a time scale of 0.1 ps.
Our simulations were performed with the program Gromacs,[9] with a time step of δt = 2 fs and integration performed via a stochastic leapfrog algorithm.[10]To begin our analysis, we generated 10
trajectories sampling the
canonical ensemble, totaling 80 ns, that involved 227 transitions
between associated and dissociated states. Initial conditions for
each of the 10 trajectories were taken from a previous simulation
run using the same Langevin dynamics. Each of the 10 points were separated
by 400 ps from their neighbors, such that they can be considered statistically
independent. We calculate the free energy along the interionic distance rion asby histogramming rion from the concatenated trajectories. Here kB is the Boltzmann constant. From Figure 1, we see that F(rion) contains a metastable associated state with a corresponding free
energy minimum at rion = 2.7 Å. This
minimum is separated from the solvent-separated state, centered around
5 Å, by a barrier of 5 kBT. For future reference, we identify the associated state
as all configurations for which rion <
3.2 Å, the dissociated state as rion > 4.4 Å, and the transition region to be 3.2 Å ≤ rion ≤ 4.4 Å.
Figure 1
Thermodynamics
of ionic dissociation. The free energy (red) as
a function of rion displays a stable associated
state at rion = 2.7 Å, separated
from the dissociated state by a free energy barrier of 5 kBT. Also plotted are the average energy
(green) and negative entropy (blue) as a function of rion. Dissociation is driven energetically and opposed
by entropy. The inset shows the free energy, the energy, and the entropic
contribution for an implicit solvent model, in which the electrostatic
interaction between the two ions is reduced by a factor of ε
= 80.
Thermodynamics of Ionic Dissociation
To gain an understanding
of ionic dissociation, we first investigate
the thermodynamics of the process along the order parameter rion. In the NVT ensemble, the
Helmholtz free energy F contains energetic and entropic
contributions, which we calculate as a function of the ion pair separation
(see Figure 1). The energy profile is computed
from a number of simulations, in each of which rion is constrained to a value between 2.47 and 7.51 Å.
For each simulation, the potential energy E was averaged
over a 100-ns-long trajectory. Plotted in green is U(rion) = ⟨E⟩ – ⟨E⟩∞, the average energy, after subtracting
the asymptotic value. The entropy S, plotted in blue,
is identified fromNote that the errors on U and S are due to the large energy fluctuations
of the many solvent–solvent interactions in the bulk. We see,
in Figure 1, that the associated state is stabilized
energetically, with a 3 kBT barrier to overcome before energetically favorable dissociation
occurs. The entropy S leads to an attractive contribution
to the free energy opposing dissociation in the range rion < 4.0 Å, a behavior familiar from entropy-driven
hydrophobic association.[11] Thus, the energy
and entropy shown in Figure 1 show markedly
different behavior than in the implicit solvent case, where the solvent
is modeled simply by a dielectric constant ε = 80 which screens
the electrostatic interaction of the ion pair by rescaling the Coulomb
term in eq 1 by a factor of 1/ε. In this
case, the energy has only one minimum at the associated state, and
the driving force to dissociation is entirely entropic, due to an
available configuration space that grows as rion2. This confirms
that the solvent plays a nontrivial role in the dissociation process.
We note that this thermodynamic picture is contrary to the behavior
of a model protein–ligand complex in water, as found in recent
simulation studies by McCammon.[12,13] For oppositely charged
protein and ligands, the dissociation is an enthalpically unfavorable
and entropically favorable process.To further investigate the
influence of the solvent on the system
entropy, we plot in Figure 2 the average numbers nNa and nCl of water
molecules within the first solvation shell of Na+ and Cl–, respectively. [The solvation shell radii for each
ion correspond to the respective minimum in the ion-oxygen radial
distribution function, 3.34 Å for Na+ and 3.74 Å
for Cl– (data not shown).] During the dissociation
process, the solvation numbers of the Na+ and Cl– ions increase by about 2 and 1, respectively. In Figure 2, we also plot in blue the average number of water
molecules simultaneously in the solvation shells of both ions. While
for the associated state there is one shared molecule, the number
of such molecules starts to increase at about rion = 3.3 Å and reach 2 at rion = 4 Å, where the solvation number of the ions saturate. The
number of shared water molecules then falls to 1 as the solvent-separated
state is reached around rion = 5 Å
and finally to 0 around rion = 6 Å.
Since the number of shared water molecules is constant for rion ≲ 3.3 Å, the increase in the
average solvation numbers nNa and nCl is due to additional water molecules entering
the respective solvation shells from the bulk. In the range 3.3 Å
≲ rion ≲ 4.0 Å, however,
the total number of water molecules in the combined solvation shells
of Na+ and Cl– grows only slowly, while
the solvation numbers in the individual shells increase by a total
of about 1 water molecule due to a solvent reorganization that creates
an additional shared water molecule. This is consistent with early
work of McCammon and others[14] on ionic
dissociation, who found that dissociation is preceded by solvent reorganization
in the first solvation shell, leading to the addition of a shared
water molecule as the transition state is approached. As the interionic
distance grows further, the solvation numbers of the individual ions
stay roughly constant, while the number of shared water molecules
decreases to 0 for sufficiently separated ions. During this final
stage of the dissociation, 2 water molecules enter the solvation shell
of the ions from the bulk to compensate for the loss of shared water
molecules. During the entire dissociation process, the total number
of water molecules in the combined solvation shells of Na+ and Cl– increases by about 4 on average.
Figure 2
Top: Average number ⟨nNa⟩
and ⟨nCl⟩ of water molecules
in the first solvation shell of Na+ and Cl–. Shown in blue is the number ⟨ns⟩ of waters common to the solvation shells of both ions. Bottom:
Sum ⟨n⟩ = ⟨nNa⟩ + ⟨nCl⟩
of the number of water molecules in the first solvation shells of
Na+ and Cl– and total number of water
molecules ⟨m⟩ = ⟨nNa⟩ + ⟨nCl⟩
– ⟨n⟩
in the combined first solvation shell.
Thermodynamics
of ionic dissociation. The free energy (red) as
a function of rion displays a stable associated
state at rion = 2.7 Å, separated
from the dissociated state by a free energy barrier of 5 kBT. Also plotted are the average energy
(green) and negative entropy (blue) as a function of rion. Dissociation is driven energetically and opposed
by entropy. The inset shows the free energy, the energy, and the entropic
contribution for an implicit solvent model, in which the electrostatic
interaction between the two ions is reduced by a factor of ε
= 80.Top: Average number ⟨nNa⟩
and ⟨nCl⟩ of water molecules
in the first solvation shell of Na+ and Cl–. Shown in blue is the number ⟨ns⟩ of waters common to the solvation shells of both ions. Bottom:
Sum ⟨n⟩ = ⟨nNa⟩ + ⟨nCl⟩
of the number of water molecules in the first solvation shells of
Na+ and Cl– and total number of water
molecules ⟨m⟩ = ⟨nNa⟩ + ⟨nCl⟩
– ⟨n⟩
in the combined first solvation shell.As shown in Figure 2, the
solvation numbers nNa and nCl show
the same roughly linear increase with interionic distance as the entropy
(see Figure 1), suggesting that the entropy
change during dissociation is due to the reduced freedom of motion
of water molecules tightly bound to the ions. Indeed, water molecules
in the first solvation shell of ions have been observed in simulations
to be orientationally highly restricted,[15] reducing the configurational space available to the molecules compared
to the bulk. The orientational restraints acting on first solvation
shell molecules are particularly pronounced for water molecules shared
by both ions. As the ions dissociate, the number of such “low
entropy” solvent molecules increases, leading to a net entropy
decrease in the system. For interionic distances of rion ≈ 4 Å and larger, the entropy is approximately
constant even though the number of total water molecules in the combined
first solvation shells of the two ions continues to increase (see
green line in the bottom panel of Figure 2).
In this regime, the sum nNa and nCl, which double counts shared water molecules
and equals the number of close constacts of water molecules with one
of the ions, remains constant. This indicates that the entropy is
related to the number of such close contacts rather than the total
number of solvating water molecules. This conclusion is confirmed
by the linear behavior of the entropy in the 3.3 Å ≲ rion ≲ 4.0 Å, where the total number
of solvating water molecules grows only slowly but the number of close
contacts increases due to the increase of shared water molecules.
For rion ≲ 3.3 Å, on the other
hand, the number of close contacts increases due to water molecules
entering the first solvation shells of the ions from the bulk. Thus,
as shown in Figure 3, overall there is a roughly
linear relationship between the number of close contacts and the entropy,
where each close contact contributes an entropy decrease of Δs ≈ 1.9kB.
Figure 3
Entropy S as a function the number ⟨n⟩ = ⟨nNa⟩
+ ⟨nCl⟩ of close contacts
between the ions and water molecules in the first solvation shell.
The dotted line denotes a linear fit to the data.
Entropy S as a function the number ⟨n⟩ = ⟨nNa⟩
+ ⟨nCl⟩ of close contacts
between the ions and water molecules in the first solvation shell.
The dotted line denotes a linear fit to the data.The above analysis, however, provides only a partial
picture of
ionic dissociation: As shown previously,[6] the interionic distance rion can be
used as an order parameter to distinguish between
the associated and dissociated states but fails in describing the
progress of the dissociation. In other words, rion is a poor reaction coordinate implying
that solvent degrees of freedom must be explicitly taken into account.
In the next section, we corroborate this finding and carry out a new
type of statistical analysis to identify the range within which solvent
degrees of freedom affect the dissociation process.
Transition Path Analysis
One of the major goals of
characterizing a reaction pathway is
the determination of the system variables that are important for the
reaction to proceed. This set of variables, if known, provides a basis
for understanding the physical mechanism underlying a complex transition.
A good reaction coordinate r will in general be a
function of a number of such collective variables, which together
completely specify the progress of a reaction. In this section, we
employ committor analysis first to test the quality of rion as a reaction coordinate, confirming results of previous
studies,[6] and then to examine the influence
of various solvent degrees of freedom on the dissociation process.In searching for the important collective variables, or optimally
a reaction coordinate, we ultimately seek a projection of phase space
that preserves the dynamical information pertaining to the reaction.
This dynamical information is captured by the committor probability, pB(x), a key tool in determining
these collective variables. For a system containing two long-lived
stable states, labeled A and B, pB(x) is defined as the probability
that a trajectory initiated from configuration x will
relax to state B before reaching state A. As such, pB is a statistical measure
of the progress of a reaction. In particular, configurations with pB = 1/2 can be considered to be transition states,
as they have equal probability to relax into A or B.While the perfect reaction coordinate is the committor
itself,[16,17]r†(x) = pB(x),
a good reaction coordinate r(x) will
to a good accuracy specify pB(x), in the sense that the committor can be written as pB(x) ≈ pB[r(x)] and the reaction
information is contained in the variables in r(x). Thus, for a good reaction coordinate, the distribution
of pB values for configurations restricted
to a particular value of r should be sharply peaked
around some characteristic value.The quality of a trial reaction
coordinate can then be investigated
by probing this distribution of committor values. For a trial reaction
coordinate r̂, one calculates pB values for configurations in the constrained equilibrium
ensemble with r̂(x) = const.
A distribution P(pB) is estimated by histogramming the pB values of the constrained ensemble, and the quality
of r̂ is assessed from the shape of P(pB): if P(pB) is
a sharply peaked function of pB, then
the degrees of freedom specified by r̂(x) determine to a good approximation the fate of the reaction.
If however P(pB) is not sharply peaked, then other degrees of freedom
not included in r̂(x) play
a role in specifying how the reaction will proceed, and thus r̂(x) is an insufficient reaction
coordinate.In the following sections, we assess the relative
importance of
various system variables in Na+Cl– dissociation
by applying committor analysis to various constrained ensembles. In
our solvated Na+Cl– system, we define B as the dissociated state, for which rion > 4.4 Å, and A as the associated
state, rion < 3.2 Å. For our committor
calculations, pB(x) is
estimated by shooting off Ns independent
trajectories starting from x, with initial velocities
drawn from the corresponding Maxwell–Boltzmann distribution.
The estimate for pB(x) is given by the fraction of these trajectories that reach the dissociated
state before associating, with an errorFor our calculations, Ns = 100 shots were performed for each pB estimate such that σ ≤ 0.05. Note that this
statistical error of the estimated committor leads to a broadening
of the committor distribution that can be statistically quantified
and needs to be taken into account in the interpretation of committor
distributions.[18,19]In investigating the thermodynamics
of dissociation above, the
sampling of the canonical NVT ensemble and constrained
ensembles was performed with Langevin dynamics. For the following
dynamical studies, however, we will be interested in deterministic
Hamiltonian dynamics. Hence, the shooting trajectories for calculation
of pB values will be performed by integrating
Hamilton’s equations of motion.
Constrained Interionic Distance rion
In characterizing the kinetic pathways to ionic dissociation,
we first test the performance of the interionic distance rion as a reaction coordinate. Such a calculation for rion has been done previously,[6] but we repeat it here, because we use a slightly different
force field for the ion–ion interaction and the ion–water
interaction here. To test whether rion alone is a good reaction coordinate, we apply committor analysis
on configurations with constrained rion. Committor values were estimated for 665 configurations having 3.45
Å ≤ rion ≤ 3.75 Å
(narrowing the width of rion* did not qualitatively change the behavior
of our results) taken from the equilibrium run used to generate Figure 1, which involved many transitions between associated
and dissociated states. The constraint range of rion was chosen around the position of the top of the free
energy barrier (see Figure 1). We plot in Figure 4 the distribution of pB values on this constrained surface. Because this range of rion corresponds to the top of the free energy
barrier, one would expect for a good reaction coordinate a sharp unimodal
distribution centered at pB = 0.5. What
one sees, however, is a bimodal distribution peaked at pB ≈ 0 and 1 and relatively low population at 0.5.
Hence, there are structures with the same interionic distance rion but very different relaxation behavior,
indicating that the solvent degrees of freedom are important in the
system committing to associate or dissociate. As this behavior was
observed previously by Geissler et al.[6] for a different force field, these findings highlight that the solvent’s
role in dissociation is robust and of general importance in describing
the reaction.
Figure 4
Distribution of pB values for equilibrium
configurations x restricted to rion(x) = rion*, corresponding
to the top of the free energy barrier shown in Figure 1. The bimodal behavior indicates that rion alone is not a sufficient reaction coordinate.
Constrained Solvent
Since the interionic distance rion alone is an insufficient reaction coordinate,
the surrounding solvent must play a crucial role in the system committing
to associate or dissociate. To study the role of the solvent more
closely, we seek to identify which water molecules are important in
the reaction, with the specific goal of finding a length scale over
which the water molecules influence the reaction. Specifically, we
perform committor analysis, on a constrained system as above, where
in addition to a fixed interionic distance rion, we also constrain or “freeze” water molecules
within a particular probe range of the ion pair. Committor analysis
applied to this system in which a part of the water molecules is held
at fixed positions will guide us in finding the length scale that
determines the range of solvent influence on dissociation: If the
distribution of pB values on these constrained
configurations is sharply peaked, then the dissociation event is only
sensitive to the frozen molecules within the given probe range; if,
however, the remaining unfrozen molecules in the periphery of the
simulation box strongly influence the reaction, then the pB distribution will not show a single pronounced peak.
A similar strategy has been used to deduce the role of the solvent
in protein folding.[20]Distribution of pB values for equilibrium
configurations x restricted to rion(x) = rion*, corresponding
to the top of the free energy barrier shown in Figure 1. The bimodal behavior indicates that rion alone is not a sufficient reaction coordinate.We wish to find the probe range over which the
peripheral variable
solvent molecules cease to influence pB. In the limit of a very small probe range, only the ions are restrained,
and we expect to see a distribution of pB values like Figure 4, where the other unfrozen
molecules are clearly influencing the fate of the ion pair. In the
opposite limit of a very large probe range, the entire simulation
box is frozen and we expect a pB distribution
that is very sharply peaked about some characteristic value. We seek
the smallest probe range over which the variability of pB becomes small enough that we are confident the molecules
within the probe range specify the fate of the reaction. To this end,
three separate probe ranges were considered, set by the hydration
structure of the ion pair: either all molecules up through the first,
second, or third hydration shells were frozen (see Figure 5).
Figure 5
Depiction of the first three solvation shells of the ion
pair,
which were selectively constrained to investigate solvent influence
on ionic dissociation. The solvation shell radii of the three shells
were defined by the respective minima in the ion–oxygen radial
distribution function, calculated as 3.34, 5.47, and 7.80 Å for
Na+ and 3.74, 6.20, and 8.18 Å for Cl–.
Depiction of the first three solvation shells of the ion
pair,
which were selectively constrained to investigate solvent influence
on ionic dissociation. The solvation shell radii of the three shells
were defined by the respective minima in the ion–oxygen radial
distribution function, calculated as 3.34, 5.47, and 7.80 Å for
Na+ and 3.74, 6.20, and 8.18 Å for Cl–.To begin the analysis, one of the three probe ranges
is chosen,
centered around the ion pair, within which all waters are constrained.
A representative initial configuration is selected, from which 125
new configurations are generated by evolving the system dynamically,
each with identical solvent positions within the probe range but variable
positions outside. We enforced these constraints on the dynamics by
simply not allowing the positions of the relevant waters to be updated
during the integration of the Langevin equation of motion. This dynamical
scheme samples a constrained equilibrium state that is equivalent
to a reduced system (the solvent outside the probe region), in the
presence of a static external field (imposed by the frozen solvent
molecules and ion pair within the probe region). Committor analysis
is then performed on this constrained state by calculating pB values for each of the 125 configurations
and histogramming the obtained committor values. Note that in the
trajectories generated for the committor calculation all constraints
used to prepare the initial conditions were released.The results
of the committor analysis are shown in Figure 6, where each subfigure corresponds to a given probe
range. Plotted within a given probe range are three distributions,
colored red, green, and blue, which correspond to three distinct sets
of 125 configurations with frozen solvent having pB values near 0, 0.5, and 1, respectively. For the smallest
probe range, where the solvent is constrained only in the first hydration
shell (part a), there is a very wide distribution of pB values for each of the three configuration sets. In
part b, where the first two solvation shells are constrained, the
distributions are not as broad as in part a but still show rather
large pB variability, implying that molecules
farther out are of importance. Finally, when all three solvation shells
are constrained, in part c, we see a much tighter distribution of pB values, which suggests that the commitment
to associate or dissociate is, to a fair degree, determined by the
solvent molecules within the first three solvation shells. These results
are consistent with studies of Geissler et al.,[6] who found that the dissociation couples to solvent motion
between the second and third solvation shells. Interestingly, the pB = 0.5 configuration set (green) shows the
broadest distribution for all three probe ranges, implying that pB is particularly sensitive to long-ranged solvent
motion near the transition state. This is consistent with previous
studies,[6] who came to the same conclusion
from studies of the mean solvent force on the ion pair at the transition
state.
Figure 6
Committor analysis applied to configurations containing “frozen”
(identical) solvent coordinates in (a) the first, (b) the first two,
and (c) the first three solvation shells, and properly equilibrated
outer shells. In each figure, the colors distinguish between different
sets of frozen solvents, chosen near the associated state (red), transition
region (green), and dissociated state (blue). When freezing the first
three solvation shells on a larger system of N =
905 water molecules, the committor distributions are not as tight
(inset of panel), further demonstrating that solvent effects on dissociation
are long-ranged.
Committor analysis applied to configurations containing “frozen”
(identical) solvent coordinates in (a) the first, (b) the first two,
and (c) the first three solvation shells, and properly equilibrated
outer shells. In each figure, the colors distinguish between different
sets of frozen solvents, chosen near the associated state (red), transition
region (green), and dissociated state (blue). When freezing the first
three solvation shells on a larger system of N =
905 water molecules, the committor distributions are not as tight
(inset of panel), further demonstrating that solvent effects on dissociation
are long-ranged.The committor results of Figure 6c, with
three frozen solvation shells, correspond to freezing roughly one-half
of the Nw = 216 water molecules. To check
the effect of system size on our results, we performed the same committor
analysis on a system of 905 waters, with identical frozen positions
as the smaller system but with a much larger number of peripheral
water molecules. For this larger system, we observe a weaker tightening
of the committor distribution as compared to the small system (see
the inset of Figure 6c), further indication
that solvent effects for this system are indeed long-ranged.As pointed out recently,[21] a reduction
of the number of degrees of freedom arising from additional constraints
leads to a narrowing of the committor distribution P(pB), even if the constraints are not
related to the reaction coordinate. To verify that the tightening
of the committor distribution observed for frozen solvation shells
is not caused by the dimensionality loss of the constrained system,
we carried out additional simulations in which the frozen water molecules
were chosen at random rather than based on their distance to the ion
pair. Specifically, we performed committor calculations analogous
to those described in the previous paragraphs but on a constrained
ensemble, in which in addition to the ion pair roughly 100 randomly
chosen water molecules were kept at fixed positions. The total number
of water molecules was Nw = 216 and the
number of fixed water molecules was chosen to correspond with the
number of molecules in the first three solvation shells, which also
contain roughly 100 molecules. The results of these calculations,
shown in Figure 7, yielded committor distributions
that are much broader than those obtained with the frozen solvation
shells. Thus, the narrowing of the committor distributions observed
in the latter case is due to the importance of water molecules close
to the ion pair rather than to the reduced dimensionality caused by
constraining the position and orientation of water molecules.
Figure 7
Committor distributions
for configurations containing roughly 100
“frozen” water molecules chosen at random (solid lines)
together with committor distributions for three frozen solvation shells
(dashed lines). Results are shown for configurations close to the
associated state (red), the transition region (green), and the dissociated
state (blue).
Committor distributions
for configurations containing roughly 100
“frozen” water molecules chosen at random (solid lines)
together with committor distributions for three frozen solvation shells
(dashed lines). Results are shown for configurations close to the
associated state (red), the transition region (green), and the dissociated
state (blue).Whether one considers the smaller or larger system,
the waters
within the first three hydration shells seem to capture the reaction
to a good degree. Can this picture be refined further? Specifically,
what is the relative importance of steric forces to electrostatics?
Because of the long-ranged influence of solvent on pB, we would expect electrostatics to play
an important role. To test this conjecture, we generated a set of
125 configurations having identical oxygen positions within the first
three solvation shells but variable hydrogen and dummy atom positions
for our 4-point TIP4P model. Because the Lennard-Jones forces are
specified by the oxygen position alone, the only variable forces within
the three solvation shells are due to electrostatic interactions.
The resulting committor distributions, shown in Figure 8, are still somewhat broad both for the smaller system (main
figure) and the larger system (inset). This indicates that the charge
distribution of the waters is of general importance, and that the pB is determined by a combination of steric and
electrostatic effects.
Figure 8
The effect of water orientations on pB. All configurations within each color contain identical
oxygen coordinates
but have varying orientations of the water molecules in the first
three solvation shells. We analyzed three sets of oxygen positions,
chosen near the associated (red), transition (green), and dissociated
(blue) states. The inset displays results of the analogous calculation
performed for N = 905 water molecules.
The effect of water orientations on pB. All configurations within each color contain identical
oxygen coordinates
but have varying orientations of the water molecules in the first
three solvation shells. We analyzed three sets of oxygen positions,
chosen near the associated (red), transition (green), and dissociated
(blue) states. The inset displays results of the analogous calculation
performed for N = 905 water molecules.
Time Scales of pB Fluctuations
In this section, we investigate the time fluctuations of pB, with the goal of finding the relevant time
scales under which the solvent rearranges itself to promote dissociation.
We capture the dynamics of the entire solvent by calculating pB along a trajectory with constraint rion = 3.73 Å, near the peak of the free
energy barrier, which we plot in Figure 9a.
This is contrasted with Figure 9b, where our
trajectory contains a constrained first solvation shell as well as
constrained rion = 3.73 Å. We see
qualitatively that the pB fluctuations
are somewhat suppressed when the first solvation shell is fixed in
addition to rion, consistent with committor
analysis of previous sections (compare Figures 4 and 6a). In Figure 9a where all solvent is free, we observe two time scales: on a large
time scale of roughly 5 ps, we observe large pB fluctuations between 0 and 1, and on a shorter time scale
of roughly 0.5 ps, we see oscillatory-like fluctuations of a much
smaller magnitude. Because this smaller time scale persists in Figure 9b, when we freeze the first solvation shell, it
is tempting to conclude that the smaller fluctuations are due to solvent
rearrangements outside the first solvation shell, and the larger pB fluctuations are due to the water rearrangements
in the first solvation shell, which occur on time scales 10 times
as large.
Figure 9
Time dependence of pB[x(t)] for trajectories generated from Langevin dynamics
with (a) constrained rion and (b) constrained rion and first solvation shell.
Time dependence of pB[x(t)] for trajectories generated from Langevin dynamics
with (a) constrained rion and (b) constrained rion and first solvation shell.
Inertial Effects
The reaction pathways characterizing
rare events will ultimately
depend upon the system dynamics. Observables such as kinetic rate
constants, committor values, and transition probabilities are generally
properties of the underlying dynamics governing the time evolution
of the system. By analyzing transition pathways for various types
of dynamics, one can then learn something about the relative importance
of certain dynamical features in facilitating a rare transition. In
this section, we will compare our calculations for Hamiltonian dynamics
to analytic results for diffusive dynamics, highlighting the importance
of inertial effects in enhancing reaction probability.To track
the differences that arise in these two dynamical regimes,
we compare the committor probability pB to the transition path probability pTP. While pB(x) is the
probability that a trajectory passing through x relaxes
into B, pTP(x) quantifies the probability that a trajectory passing through x is a transition pathway. For a given configuration x, pTP(x) is
estimated by generating NTP = 100 trajectories
from x by integrating Hamilton’s equations
forward and backward in time with initial velocities sampled from
the Maxwell–Boltzmann distribution. In the diffusive regime,
Hummer[16] showed that pTP is determined solely by pB:We compare this analytic result to correlations
we observe between pTP and pB when using Hamiltonian dynamics (i.e., deterministic
frictionless dynamics described by Hamilton’s equations of
motion).In Figure 10, we display a scatter
plot
of pTP vs pB for equilibrium configurations constrained to rion = rion* (data from Figure 4), plotted against the analytic result, eq 5, for diffusive dynamics. While for configurations close to pB = 0 and 1 we see similar behavior between
the two regimes, near the transition state, pTP is enhanced relative to diffusive behavior. Hence, for Hamiltonian
dynamics, inertial effects enhance the reaction probability near the
transition state by up to 40–50%. This is intuitive: Under
Hamiltonian dynamics, when the system evolves from A and up to the transition state, the probability to complete the
transition by moving down to the reactant region B will be influenced by the instantaneous value of the momenta at
the top of the free energy barrier. However, under diffusive dynamics,
this enhancement is not present simply because the momenta are equilibrated
instantaneously, providing no means to help push the system to the
other side.
Figure 10
Inertial effects near the transition state. The calculated
transition
path probability pTP is plotted against
the committor probability pB for configurations
constrained to rion = rion*. Our results
under Hamiltonian dynamics, shown in red, show a deviation of the
observed pTP from the analytic result
under diffusive dynamics.[16] These inertial
effects enhance pTP near the transition
state.
Inertial effects near the transition state. The calculated
transition
path probability pTP is plotted against
the committor probability pB for configurations
constrained to rion = rion*. Our results
under Hamiltonian dynamics, shown in red, show a deviation of the
observed pTP from the analytic result
under diffusive dynamics.[16] These inertial
effects enhance pTP near the transition
state.
Discussion and Conclusions
In this study, we investigated
the dissociation pathways of Na+Cl– in
water. We showed that the thermodynamics
of dissociation is driven energetically, and opposed entropically,
with the loss of entropy explained by an increasing number of highly
coordinated solvent molecules in the first solvation shell as the
ions separate. By performing committor analysis on the system with
various constraints, we showed that (a) the interionic distance is
an insufficient reaction coordinate, in accordance with previous findings,
(b) the influence of the solvent on ionic dissociation is long-ranged,
extending out into the third solvation shell, and (c) both steric
effects and electrostatics contribute to the system’s commitment
to dissociation. We also highlighted the time scales under which solvent
fluctuations influence dissociation, as well as the importance of
inertial effects near the transition state.In characterizing
the kinetic pathway to dissociation, the ultimate
goal is to find a good reaction coordinate for the system. Despite
the seeming simplicity of the solute, two atoms, finding an accurate
description of the solvent is a difficult task. Previous attempts
have shown correlations between Na+Cl– dissociation and solvation numbers[6] and
other orientational indicators of local solvent density.[6,22,23] Geissler et al.[6] have suggested a mechanism whereby dissociation is accompanied
by insertion of a water molecule from the bulk into the first solvation
shell, preceded by a buildup of water density in the second solvation
shell and a depletion between the second and third shells at the transition
state. This picture is consistent with our findings that dissociation
is sensitive to solvent rearrangements at these ranges.We have
applied, with little success, a maximum likelihood approach[1] to find an optimal reaction coordinate that depends
on these and other solvent variables sensitive to solvent density
rearrangements. We have also found weak correlations between pB and (a) the net solvent dipole along the interionic
axis as well as (b) the net solvent force along the interionic axis.
The microscopic mechanism leading to ionic dissociation, however,
is still not completely known, and more study is needed.
Authors: Young Min Rhee; Eric J Sorin; Guha Jayachandran; Erik Lindahl; Vijay S Pande Journal: Proc Natl Acad Sci U S A Date: 2004-04-16 Impact factor: 11.205