Literature DB >> 23077256

The great human expansion.

Brenna M Henn1, L L Cavalli-Sforza, Marcus W Feldman.   

Abstract

Genetic and paleoanthropological evidence is in accord that today's human population is the result of a great demic (demographic and geographic) expansion that began approximately 45,000 to 60,000 y ago in Africa and rapidly resulted in human occupation of almost all of the Earth's habitable regions. Genomic data from contemporary humans suggest that this expansion was accompanied by a continuous loss of genetic diversity, a result of what is called the "serial founder effect." In addition to genomic data, the serial founder effect model is now supported by the genetics of human parasites, morphology, and linguistics. This particular population history gave rise to the two defining features of genetic variation in humans: genomes from the substructured populations of Africa retain an exceptional number of unique variants, and there is a dramatic reduction in genetic diversity within populations living outside of Africa. These two patterns are relevant for medical genetic studies mapping genotypes to phenotypes and for inferring the power of natural selection in human history. It should be appreciated that the initial expansion and subsequent serial founder effect were determined by demographic and sociocultural factors associated with hunter-gatherer populations. How do we reconcile this major demic expansion with the population stability that followed for thousands years until the inventions of agriculture? We review advances in understanding the genetic diversity within Africa and the great human expansion out of Africa and offer hypotheses that can help to establish a more synthetic view of modern human evolution.

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Mesh:

Year:  2012        PMID: 23077256      PMCID: PMC3497766          DOI: 10.1073/pnas.1212380109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  67 in total

1.  A human genome diversity cell line panel.

Authors:  Howard M Cann; Claudia de Toma; Lucien Cazes; Marie-Fernande Legrand; Valerie Morel; Laurence Piouffre; Julia Bodmer; Walter F Bodmer; Batsheva Bonne-Tamir; Anne Cambon-Thomsen; Zhu Chen; J Chu; Carlo Carcassi; Licinio Contu; Ruofu Du; Laurent Excoffier; G B Ferrara; Jonathan S Friedlaender; Helena Groot; David Gurwitz; Trefor Jenkins; Rene J Herrera; Xiaoyi Huang; Judith Kidd; Kenneth K Kidd; Andre Langaney; Alice A Lin; S Qasim Mehdi; Peter Parham; Alberto Piazza; Maria Pia Pistillo; Yaping Qian; Qunfang Shu; Jiujin Xu; S Zhu; James L Weber; Henry T Greely; Marcus W Feldman; Gilles Thomas; Jean Dausset; L Luca Cavalli-Sforza
Journal:  Science       Date:  2002-04-12       Impact factor: 47.728

2.  The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations.

Authors:  Gabor T Marth; Eva Czabarka; Janos Murvai; Stephen T Sherry
Journal:  Genetics       Date:  2004-01       Impact factor: 4.562

3.  Limited dispersal in mobile hunter-gatherer Baka Pygmies.

Authors:  Paul Verdu; Raphaël Leblois; Alain Froment; Sylvain Théry; Serge Bahuchet; François Rousset; Evelyne Heyer; Renaud Vitalis
Journal:  Biol Lett       Date:  2010-04-28       Impact factor: 3.703

4.  Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa.

Authors:  Sohini Ramachandran; Omkar Deshpande; Charles C Roseman; Noah A Rosenberg; Marcus W Feldman; L Luca Cavalli-Sforza
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-21       Impact factor: 11.205

5.  Origins and genetic diversity of pygmy hunter-gatherers from Western Central Africa.

Authors:  Paul Verdu; Frederic Austerlitz; Arnaud Estoup; Renaud Vitalis; Myriam Georges; Sylvain Théry; Alain Froment; Sylvie Le Bomin; Antoine Gessain; Jean-Marie Hombert; Lolke Van der Veen; Lluis Quintana-Murci; Serge Bahuchet; Evelyne Heyer
Journal:  Curr Biol       Date:  2009-02-05       Impact factor: 10.834

6.  Bayesian coalescent inference of major human mitochondrial DNA haplogroup expansions in Africa.

Authors:  Quentin D Atkinson; Russell D Gray; Alexei J Drummond
Journal:  Proc Biol Sci       Date:  2009-01-22       Impact factor: 5.349

7.  Evolution and functional impact of rare coding variation from deep sequencing of human exomes.

Authors:  Jacob A Tennessen; Abigail W Bigham; Timothy D O'Connor; Wenqing Fu; Eimear E Kenny; Simon Gravel; Sean McGee; Ron Do; Xiaoming Liu; Goo Jun; Hyun Min Kang; Daniel Jordan; Suzanne M Leal; Stacey Gabriel; Mark J Rieder; Goncalo Abecasis; David Altshuler; Deborah A Nickerson; Eric Boerwinkle; Shamil Sunyaev; Carlos D Bustamante; Michael J Bamshad; Joshua M Akey
Journal:  Science       Date:  2012-05-17       Impact factor: 47.728

8.  Using genetic evidence to evaluate four palaeoanthropological hypotheses for the timing of Neanderthal and modern human origins.

Authors:  Phillip Endicott; Simon Y W Ho; Chris Stringer
Journal:  J Hum Evol       Date:  2010-05-26       Impact factor: 3.895

9.  Female reproductive competition within families in rural Gambia.

Authors:  Ruth Mace; Alexandra Alvergne
Journal:  Proc Biol Sci       Date:  2012-01-18       Impact factor: 5.349

10.  Brief communication: human cranial variation fits iterative founder effect model with African origin.

Authors:  Noreen von Cramon-Taubadel; Stephen J Lycett
Journal:  Am J Phys Anthropol       Date:  2008-05       Impact factor: 2.868

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  111 in total

Review 1.  Interethnic variation of CYP2C19 alleles, 'predicted' phenotypes and 'measured' metabolic phenotypes across world populations.

Authors:  I Fricke-Galindo; C Céspedes-Garro; F Rodrigues-Soares; M E G Naranjo; Á Delgado; F de Andrés; M López-López; E Peñas-Lledó; A LLerena
Journal:  Pharmacogenomics J       Date:  2015-10-27       Impact factor: 3.550

2.  Discovery of the Fuyan teeth: challenging or complementing the out-of-Africa scenario?

Authors:  Yu-Chun Li; Jiao-Yang Tian; Qing-Peng Kong
Journal:  Dongwuxue Yanjiu       Date:  2015-11-18

3.  Human phylogeography and diversity.

Authors:  Alexander H Harcourt
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-19       Impact factor: 11.205

4.  Oxytonergic circuitry sustains and enables creative cognition in humans.

Authors:  Carsten K W De Dreu; Matthijs Baas; Marieke Roskes; Daniel J Sligte; Richard P Ebstein; Soo Hong Chew; Terry Tong; Yushi Jiang; Naama Mayseless; Simone G Shamay-Tsoory
Journal:  Soc Cogn Affect Neurosci       Date:  2013-07-16       Impact factor: 3.436

Review 5.  The role of transposable elements in health and diseases of the central nervous system.

Authors:  Matthew T Reilly; Geoffrey J Faulkner; Joshua Dubnau; Igor Ponomarev; Fred H Gage
Journal:  J Neurosci       Date:  2013-11-06       Impact factor: 6.167

6.  Modeling Human Population Separation History Using Physically Phased Genomes.

Authors:  Shiya Song; Elzbieta Sliwerska; Sarah Emery; Jeffrey M Kidd
Journal:  Genetics       Date:  2016-11-09       Impact factor: 4.562

7.  A Qualitative Analysis of How Anthropologists Interpret the Race Construct.

Authors:  Jayne O Ifekwunigwe; Jennifer K Wagner; Joon-Ho Yu; Tanya M Harrell; Michael J Bamshad; Charmaine D Royal
Journal:  Am Anthropol       Date:  2017-08-14

8.  No Evidence for Recent Selection at FOXP2 among Diverse Human Populations.

Authors:  Elizabeth Grace Atkinson; Amanda Jane Audesse; Julia Adela Palacios; Dean Michael Bobo; Ashley Elizabeth Webb; Sohini Ramachandran; Brenna Mariah Henn
Journal:  Cell       Date:  2018-08-02       Impact factor: 41.582

9.  Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar.

Authors:  George H Perry; Edward E Louis; Aakrosh Ratan; Oscar C Bedoya-Reina; Richard C Burhans; Runhua Lei; Steig E Johnson; Stephan C Schuster; Webb Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

Review 10.  Co-evolution of MHC class I and variable NK cell receptors in placental mammals.

Authors:  Lisbeth A Guethlein; Paul J Norman; Hugo G Hilton; Peter Parham
Journal:  Immunol Rev       Date:  2015-09       Impact factor: 12.988

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