Literature DB >> 24198348

The role of transposable elements in health and diseases of the central nervous system.

Matthew T Reilly1, Geoffrey J Faulkner, Joshua Dubnau, Igor Ponomarev, Fred H Gage.   

Abstract

First discovered in maize by Barbara McClintock in the 1940s, transposable elements (TEs) are DNA sequences that in some cases have the ability to move along chromosomes or "transpose" in the genome. This revolutionary finding was initially met with resistance by the scientific community and viewed by some as heretical. A large body of knowledge has accumulated over the last 60 years on the biology of TEs. Indeed, it is now known that TEs can generate genomic instability and reconfigure gene expression networks both in the germline and somatic cells. This review highlights recent findings on the role of TEs in health and diseases of the CNS, which were presented at the 2013 Society for Neuroscience meeting. The work of the speakers in this symposium shows that TEs are expressed and active in the brain, challenging the dogma that neuronal genomes are static and revealing that they are susceptible to somatic genomic alterations. These new findings on TE expression and function in the CNS have major implications for understanding the neuroplasticity of the brain, which could hypothetically have a role in shaping individual behavior and contribute to vulnerability to disease.

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Year:  2013        PMID: 24198348      PMCID: PMC3818539          DOI: 10.1523/JNEUROSCI.3369-13.2013

Source DB:  PubMed          Journal:  J Neurosci        ISSN: 0270-6474            Impact factor:   6.167


  138 in total

1.  Gene coexpression networks in human brain identify epigenetic modifications in alcohol dependence.

Authors:  Igor Ponomarev; Shi Wang; Lingling Zhang; R Adron Harris; R Dayne Mayfield
Journal:  J Neurosci       Date:  2012-02-01       Impact factor: 6.167

2.  The significance of responses of the genome to challenge.

Authors:  B McClintock
Journal:  Science       Date:  1984-11-16       Impact factor: 47.728

3.  Genetic similarities within and between human populations.

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Journal:  Genetics       Date:  2007-03-04       Impact factor: 4.562

4.  Human L1 retrotransposition: cis preference versus trans complementation.

Authors:  W Wei; N Gilbert; S L Ooi; J F Lawler; E M Ostertag; H H Kazazian; J D Boeke; J V Moran
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

5.  Human LINE retrotransposons generate processed pseudogenes.

Authors:  C Esnault; J Maestre; T Heidmann
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

6.  So much "junk" DNA in our genome.

Authors:  S Ohno
Journal:  Brookhaven Symp Biol       Date:  1972

Review 7.  TDP-43 functions and pathogenic mechanisms implicated in TDP-43 proteinopathies.

Authors:  Todd J Cohen; Virginia M Y Lee; John Q Trojanowski
Journal:  Trends Mol Med       Date:  2011-07-23       Impact factor: 11.951

8.  The current source of human Alu retroposons is a conserved gene shared with Old World monkey.

Authors:  R J Britten; D B Stout; E H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  1989-05       Impact factor: 11.205

9.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

10.  An endogenous small interfering RNA pathway in Drosophila.

Authors:  Benjamin Czech; Colin D Malone; Rui Zhou; Alexander Stark; Catherine Schlingeheyde; Monica Dus; Norbert Perrimon; Manolis Kellis; James A Wohlschlegel; Ravi Sachidanandam; Gregory J Hannon; Julius Brennecke
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

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  68 in total

Review 1.  Epigenetic regulation of ageing: linking environmental inputs to genomic stability.

Authors:  Bérénice A Benayoun; Elizabeth A Pollina; Anne Brunet
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09-16       Impact factor: 94.444

2.  Neuroepigenomics: Resources, Obstacles, and Opportunities.

Authors:  John S Satterlee; Andrea Beckel-Mitchener; Roger Little; Dena Procaccini; Joni L Rutter; Amy C Lossie
Journal:  Neuroepigenetics       Date:  2015-01-01

Review 3.  Stress and the dynamic genome: Steroids, epigenetics, and the transposome.

Authors:  Richard G Hunter; Khatuna Gagnidze; Bruce S McEwen; Donald W Pfaff
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-10       Impact factor: 11.205

4.  TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets.

Authors:  Ying Jin; Oliver H Tam; Eric Paniagua; Molly Hammell
Journal:  Bioinformatics       Date:  2015-07-23       Impact factor: 6.937

5.  Cell lineage analysis in human brain using endogenous retroelements.

Authors:  Gilad D Evrony; Eunjung Lee; Bhaven K Mehta; Yuval Benjamini; Robert M Johnson; Xuyu Cai; Lixing Yang; Psalm Haseley; Hillel S Lehmann; Peter J Park; Christopher A Walsh
Journal:  Neuron       Date:  2015-01-07       Impact factor: 17.173

Review 6.  An evolving view of epigenetic complexity in the brain.

Authors:  Irfan A Qureshi; Mark F Mehler
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-09-26       Impact factor: 6.237

Review 7.  Epigenetic mechanisms underlying the pathogenesis of neurogenetic diseases.

Authors:  Irfan A Qureshi; Mark F Mehler
Journal:  Neurotherapeutics       Date:  2014-10       Impact factor: 7.620

8.  TranSurVeyor: an improved database-free algorithm for finding non-reference transpositions in high-throughput sequencing data.

Authors:  Ramesh Rajaby; Wing-Kin Sung
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

Review 9.  Extracellular vesicles and intercellular communication within the nervous system.

Authors:  Valentina Zappulli; Kristina Pagh Friis; Zachary Fitzpatrick; Casey A Maguire; Xandra O Breakefield
Journal:  J Clin Invest       Date:  2016-04-01       Impact factor: 14.808

10.  cGAS/STING Pathway Activation Contributes to Delayed Neurodegeneration in Neonatal Hypoxia-Ischemia Rat Model: Possible Involvement of LINE-1.

Authors:  Marcin Gamdzyk; Desislava Met Doycheva; Camila Araujo; Umut Ocak; Yujie Luo; Jiping Tang; John H Zhang
Journal:  Mol Neurobiol       Date:  2020-04-06       Impact factor: 5.590

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