Literature DB >> 23071326

Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis.

Xiangqiang Zhan1, Bangshing Wang, Hongjiang Li, Renyi Liu, Rajwant K Kalia, Jian-Kang Zhu, Viswanathan Chinnusamy.   

Abstract

MicroRNAs (miRNAs) are important for plant development and stress responses. However, factors regulating miRNA metabolism are not completely understood. SICKLE (SIC), a proline-rich protein critical for development and abiotic stress tolerance of Arabidopsis, was identified in this study. Loss-of-function sic-1 mutant plants exhibited a serrated, sickle-like leaf margin, reduced height, delayed flowering, and abnormal inflorescence phyllotaxy, which are common characteristics of mutants involved in miRNA biogenesis. The sic-1 mutant plants accumulated lower levels of a subset of miRNAs and transacting siRNAs but higher levels of corresponding primary miRNAs than the WT. The SIC protein colocalizes with the miRNA biogenesis component HYL1 in distinct subnuclear bodies. sic-1 mutant plants also accumulated higher levels of introns from hundreds of loci. In addition, sic-1 mutant plants are hypersensitive to chilling and salt stresses. These results suggest that SIC is a unique factor required for the biogenesis of some miRNAs and degradation of some spliced introns and important for plant development and abiotic stress responses.

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Year:  2012        PMID: 23071326      PMCID: PMC3497810          DOI: 10.1073/pnas.1216199109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  54 in total

1.  SERRATE: a new player on the plant microRNA scene.

Authors:  Dajana Lobbes; Ghanasyam Rallapalli; Dominik D Schmidt; Cathie Martin; Jonathan Clarke
Journal:  EMBO Rep       Date:  2006-09-15       Impact factor: 8.807

2.  Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in Arabidopsis.

Authors:  Yoichiro Fujioka; Maki Utsumi; Yusuke Ohba; Yuichiro Watanabe
Journal:  Plant Cell Physiol       Date:  2007-08-03       Impact factor: 4.927

3.  Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body.

Authors:  Liang Song; Meng-Hsuan Han; Joanna Lesicka; Nina Fedoroff
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-16       Impact factor: 11.205

Review 4.  Small RNAs as big players in plant abiotic stress responses and nutrient deprivation.

Authors:  Ramanjulu Sunkar; Viswanathan Chinnusamy; Jianhua Zhu; Jian-Kang Zhu
Journal:  Trends Plant Sci       Date:  2007-06-18       Impact factor: 18.313

5.  Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation.

Authors:  Taiowa A Montgomery; Miya D Howell; Josh T Cuperus; Dawei Li; Jesse E Hansen; Amanda L Alexander; Elisabeth J Chapman; Noah Fahlgren; Edwards Allen; James C Carrington
Journal:  Cell       Date:  2008-03-13       Impact factor: 41.582

6.  Improved Gateway binary vectors: high-performance vectors for creation of fusion constructs in transgenic analysis of plants.

Authors:  Tsuyoshi Nakagawa; Takamasa Suzuki; Satoko Murata; Shinya Nakamura; Takeshi Hino; Kenichiro Maeo; Ryo Tabata; Tsutae Kawai; Katsunori Tanaka; Yasuo Niwa; Yuichiro Watanabe; Kenzo Nakamura; Tetsuya Kimura; Sumie Ishiguro
Journal:  Biosci Biotechnol Biochem       Date:  2007-08-07       Impact factor: 2.043

7.  SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis.

Authors:  Li Yang; Ziqiang Liu; Feng Lu; Aiwu Dong; Hai Huang
Journal:  Plant J       Date:  2006-08-02       Impact factor: 6.417

8.  Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana.

Authors:  Han-Hua Liu; Xin Tian; Yan-Jie Li; Chang-Ai Wu; Cheng-Chao Zheng
Journal:  RNA       Date:  2008-03-20       Impact factor: 4.942

9.  Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants.

Authors:  Yuda Fang; David L Spector
Journal:  Curr Biol       Date:  2007-04-19       Impact factor: 10.834

Review 10.  The role of small RNAs in abiotic stress.

Authors:  Jonathan R Phillips; Tamas Dalmay; Dorothea Bartels
Journal:  FEBS Lett       Date:  2007-04-17       Impact factor: 4.124

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  56 in total

Review 1.  Biogenesis, turnover, and mode of action of plant microRNAs.

Authors:  Kestrel Rogers; Xuemei Chen
Journal:  Plant Cell       Date:  2013-07-23       Impact factor: 11.277

2.  CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts.

Authors:  Shuxin Zhang; Meng Xie; Guodong Ren; Bin Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-07       Impact factor: 11.205

Review 3.  The crosstalk between plant microRNA biogenesis factors and the spliceosome.

Authors:  Zofia Szweykowska-Kulińska; Artur Jarmolowski; Franck Vazquez
Journal:  Plant Signal Behav       Date:  2013-12-03

Review 4.  Regulation of pri-MIRNA processing: mechanistic insights into the miRNA homeostasis in plant.

Authors:  Jayanti Jodder
Journal:  Plant Cell Rep       Date:  2021-01-16       Impact factor: 4.570

5.  Chilli leaf curl virus infection downregulates the expression of the genes encoding chloroplast proteins and stress-related proteins.

Authors:  Nirbhay Kumar Kushwaha; Pranav Pankaj Sahu; Manoj Prasad; Supriya Chakrabroty
Journal:  Physiol Mol Biol Plants       Date:  2019-08-22

6.  The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing.

Authors:  Tianran Jia; Bailong Zhang; Chenjiang You; Yong Zhang; Liping Zeng; Shengjun Li; Kaeli C M Johnson; Bin Yu; Xin Li; Xuemei Chen
Journal:  Plant Cell       Date:  2017-09-25       Impact factor: 11.277

7.  MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.

Authors:  Shengjun Li; Kan Liu; Bangjun Zhou; Mu Li; Shuxin Zhang; Lirong Zeng; Chi Zhang; Bin Yu
Journal:  Plant Cell       Date:  2018-02-05       Impact factor: 11.277

8.  Active 5' splice sites regulate the biogenesis efficiency of Arabidopsis microRNAs derived from intron-containing genes.

Authors:  Katarzyna Knop; Agata Stepien; Maria Barciszewska-Pacak; Michal Taube; Dawid Bielewicz; Michal Michalak; Jan W Borst; Artur Jarmolowski; Zofia Szweykowska-Kulinska
Journal:  Nucleic Acids Res       Date:  2017-03-17       Impact factor: 16.971

9.  The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing.

Authors:  Carine M Marshall; Virginia Tartaglio; Maritza Duarte; Frank G Harmon
Journal:  Plant Cell       Date:  2016-09-13       Impact factor: 11.277

10.  MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis.

Authors:  Fan Jia; Christopher D Rock
Journal:  Plant Mol Biol       Date:  2013-01-23       Impact factor: 4.076

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