Literature DB >> 23070299

Optimal graph search based segmentation of airway tree double surfaces across bifurcations.

Xiaomin Liu1, Danny Z Chen, Merryn H Tawhai, Xiaodong Wu, Eric A Hoffman, Milan Sonka.   

Abstract

Identification of both the luminal and the wall areas of the bronchial tree structure from volumetric X-ray computed tomography (CT) data sets is of critical importance in distinguishing important phenotypes within numerous major lung diseases including chronic obstructive pulmonary diseases (COPD) and asthma. However, accurate assessment of the inner and outer airway wall surfaces of a complete 3-D tree structure is difficult due to their complex nature, particularly around the branch areas. In this paper, we extend a graph search based technique (LOGISMOS) to simultaneously identify multiple inter-related surfaces of branching airway trees. We first perform a presegmentation of the input 3-D image to obtain basic information about the tree topology. The presegmented image is resampled along judiciously determined paths to produce a set of vectors of voxels (called voxel columns). The resampling process utilizes medial axes to ensure that voxel columns of appropriate lengths and directions are used to capture the object surfaces without interference. A geometric graph is constructed whose edges connect voxels in the resampled voxel columns and enforce validity of the smoothness and separation constraints on the sought surfaces. Cost functions with directional information are employed to distinguish inner and outer walls. The assessment of wall thickness measurement on a CT-scanned double-wall physical phantom (patterned after an in vivo imaged human airway tree) achieved highly accurate results on the entire 3-D tree. The observed mean signed error of wall thickness ranged from -0.09 ±0.24 mm to 0.07 ±0.23 mm in bifurcating/nonbifurcating areas. The mean unsigned errors were 0.16±0.12 mm to 0.20±0.11 mm. When the airway wall surface was partitioned into meaningful subregions, the airway wall thickness accuracy was the same in most tested bifurcation/nonbifurcation and carina/noncarina regions (p=NS). Once validated on phantoms, our method was applied to human in vivo volumetric CT data to demonstrate relationships of airway wall thickness as a function of luminal dimension and airway tree generation. Wall thickness differences between the bifurcation/nonbifurcation regions were statistically significant (p < 0.05) for tree generations 6, 7, 8, and 9. In carina/noncarina regions, the wall thickness was statistically different in generations 1, 4, 5, 6, 7, and 8.

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Year:  2012        PMID: 23070299      PMCID: PMC4086865          DOI: 10.1109/TMI.2012.2223760

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  24 in total

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Journal:  J Appl Physiol (1985)       Date:  2003-01-17

2.  Segmentation and analysis of the human airway tree from three-dimensional X-ray CT images.

Authors:  Deniz Aykac; Eric A Hoffman; Geoffrey McLennan; Joseph M Reinhardt
Journal:  IEEE Trans Med Imaging       Date:  2003-08       Impact factor: 10.048

3.  LOGISMOS--layered optimal graph image segmentation of multiple objects and surfaces: cartilage segmentation in the knee joint.

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4.  Intrathoracic airway trees: segmentation and airway morphology analysis from low-dose CT scans.

Authors:  Juerg Tschirren; Eric A Hoffman; Geoffrey McLennan; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2005-12       Impact factor: 10.048

5.  Optimal surface segmentation in volumetric images--a graph-theoretic approach.

Authors:  Kang Li; Xiaodong Wu; Danny Z Chen; Milan Sonka
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2006-01       Impact factor: 6.226

Review 6.  State of the Art. A structural and functional assessment of the lung via multidetector-row computed tomography: phenotyping chronic obstructive pulmonary disease.

Authors:  Eric A Hoffman; Brett A Simon; Geoffrey McLennan
Journal:  Proc Am Thorac Soc       Date:  2006-08

Review 7.  CT based computerized identification and analysis of human airways: a review.

Authors:  Jiantao Pu; Suicheng Gu; Shusen Liu; Shaocheng Zhu; David Wilson; Jill M Siegfried; David Gur
Journal:  Med Phys       Date:  2012-05       Impact factor: 4.071

8.  A quantitative method for estimating individual lung cancer risk.

Authors:  Ricardo S Avila; Javier J Zulueta; Nawar M Shara; Kenneth Jansen; Giulia Veronesi; Hong Wang; James L Mulshine
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9.  Accurate airway wall estimation using phase congruency.

Authors:  Raúl San José Estépar; George G Washko; Edwin K Silverman; John J Reilly; Ron Kikinis; Carl-Fredrik Westin
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10.  Assessment of methacholine-induced airway constriction by ultrafast high-resolution computed tomography.

Authors:  I Amirav; S S Kramer; M M Grunstein; E A Hoffman
Journal:  J Appl Physiol (1985)       Date:  1993-11
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  11 in total

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2.  LOGISMOS-B: layered optimal graph image segmentation of multiple objects and surfaces for the brain.

Authors:  Ipek Oguz; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2014-02-07       Impact factor: 10.048

3.  Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts.

Authors:  Christian Bauer; Michael Eberlein; Reinhard R Beichel
Journal:  IEEE Trans Med Imaging       Date:  2014-11-25       Impact factor: 10.048

4.  Airway tree reconstruction in expiration chest CT scans facilitated by information transfer from corresponding inspiration scans.

Authors:  Christian Bauer; Michael Eberlein; Reinhard R Beichel
Journal:  Med Phys       Date:  2016-03       Impact factor: 4.071

5.  A hybrid method for airway segmentation and automated measurement of bronchial wall thickness on CT.

Authors:  Ziyue Xu; Ulas Bagci; Brent Foster; Awais Mansoor; Jayaram K Udupa; Daniel J Mollura
Journal:  Med Image Anal       Date:  2015-05-14       Impact factor: 8.545

6.  Generative-based airway and vessel morphology quantification on chest CT images.

Authors:  Pietro Nardelli; James C Ross; Raúl San José Estépar
Journal:  Med Image Anal       Date:  2020-03-28       Impact factor: 8.545

7.  Optimal surface segmentation with convex priors in irregularly sampled space.

Authors:  Abhay Shah; Michael D Abámoff; Xiaodong Wu
Journal:  Med Image Anal       Date:  2019-02-08       Impact factor: 8.545

8.  Graph-based IVUS segmentation with efficient computer-aided refinement.

Authors:  Shanhui Sun; Milan Sonka; Reinhard R Beichel
Journal:  IEEE Trans Med Imaging       Date:  2013-04-30       Impact factor: 10.048

9.  Subvoxel accurate graph search using non-Euclidean graph space.

Authors:  Michael D Abràmoff; Xiaodong Wu; Kyungmoo Lee; Li Tang
Journal:  PLoS One       Date:  2014-10-14       Impact factor: 3.240

10.  A robust statistics driven volume-scalable active contour for segmenting anatomical structures in volumetric medical images with complex conditions.

Authors:  Kuanquan Wang; Chao Ma
Journal:  Biomed Eng Online       Date:  2016-04-14       Impact factor: 2.819

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