Literature DB >> 23649180

Graph-based IVUS segmentation with efficient computer-aided refinement.

Shanhui Sun1, Milan Sonka, Reinhard R Beichel.   

Abstract

A new graph-based approach for segmentation of luminal and external elastic lamina (EEL) surface of coronary vessels in gated 20 MHz intpan class="Chemical">ravascular ultrasound (IVUS) image sequences (volumes) is presented. The approach consists of a fully automated segmentation stage ("new automated" or NA) and a user-guided computer-aided refinement ("new refinement" or NR) stage. Both approaches are based on the LOGISMOS approach for simultaneous dual-surface graph-based segmentation. This combination allows the user to efficiently combine general information about IVUS image appearance and case-specific IVUS morphology and therefore deal with frequently occurring issues like calcified plaque-causing signal shadowing-and imaging artifacts. The automated segmentation stage starts with pre-segmenting the lumen to automatically define the lumen centerline, which is used to transform the segmentation task into a LOGISMOS-family graph optimization problem. Following the automated segmentation, the user can inspect the result and correct local or regional segmentation inaccuracies by (iteratively) providing approximate clues regarding the location of the desired surface locations. This expert information is utilized to modify the previously calculated cost functions, locally re-optimizing the underlying modified graph without a need to start the new optimization from scratch. Validation of our method was performed on 41 gated 20 MHz IVUS data sets for which an expert-defined independent standard was available. Resulting from the automated stage of the approach (NA), the mean and standard deviation of the root mean square area errors for the luminal and external elastic lamina surfaces were 1.12 ±0.67 mm (2) and 2.35 ±1.61 mm (2) , respectively. Following the refinement stage (NR), the root mean square area errors significantly decreased to 0.82 ±0.44 mm (2) and 1.17 ±0.65 mm (2) for the same surfaces, respectively ( for both surfaces). The approach is delivering a previously unachievable speed of obtaining clinically relevant segmentations compared to the current approaches of automated segmentation followed by manual editing.

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Year:  2013        PMID: 23649180      PMCID: PMC3883441          DOI: 10.1109/TMI.2013.2260763

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  15 in total

1.  Evaluation of three-dimensional segmentation algorithms for the identification of luminal and medial-adventitial borders in intravascular ultrasound images.

Authors:  J D Klingensmith; R Shekhar; D G Vince
Journal:  IEEE Trans Med Imaging       Date:  2000-10       Impact factor: 10.048

2.  Tissue characterization in intravascular ultrasound images.

Authors:  X Zhang; C R McKay; M Sonka
Journal:  IEEE Trans Med Imaging       Date:  1998-12       Impact factor: 10.048

3.  Optimal graph search segmentation using arc-weighted graph for simultaneous surface detection of bladder and prostate.

Authors:  Qi Song; Xiaodong Wu; Yunlong Liu; Mark Smith; John Buatti; Milan Sonka
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

4.  LOGISMOS--layered optimal graph image segmentation of multiple objects and surfaces: cartilage segmentation in the knee joint.

Authors:  Yin Yin; Xiangmin Zhang; Rachel Williams; Xiaodong Wu; Donald D Anderson; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2010-07-19       Impact factor: 10.048

5.  Plaque development, vessel curvature, and wall shear stress in coronary arteries assessed by X-ray angiography and intravascular ultrasound.

Authors:  Andreas Wahle; John J Lopez; Mark E Olszewski; Sarah C Vigmostad; Krishnan B Chandran; James D Rossen; Milan Sonka
Journal:  Med Image Anal       Date:  2006-04-27       Impact factor: 8.545

6.  Optimal surface segmentation in volumetric images--a graph-theoretic approach.

Authors:  Kang Li; Xiaodong Wu; Danny Z Chen; Milan Sonka
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2006-01       Impact factor: 6.226

7.  Shape-driven segmentation of the arterial wall in intravascular ultrasound images.

Authors:  Gozde Unal; Susann Bucher; Stephane Carlier; Greg Slabaugh; Tong Fang; Kaoru Tanaka
Journal:  IEEE Trans Inf Technol Biomed       Date:  2008-05

8.  Intravascular ultrasound image segmentation: a three-dimensional fast-marching method based on gray level distributions.

Authors:  Marie-Hélène Roy Cardinal; Jean Meunier; Gilles Soulez; Roch L Maurice; Eric Therasse; Guy Cloutier
Journal:  IEEE Trans Med Imaging       Date:  2006-05       Impact factor: 10.048

9.  Fast-marching segmentation of three-dimensional intravascular ultrasound images: a pre- and post-intervention study.

Authors:  Marie-Hélène Roy Cardinal; Gilles Soulez; Jean-Claude Tardif; Jean Meunier; Guy Cloutier
Journal:  Med Phys       Date:  2010-07       Impact factor: 4.071

10.  Optimal graph search based segmentation of airway tree double surfaces across bifurcations.

Authors:  Xiaomin Liu; Danny Z Chen; Merryn H Tawhai; Xiaodong Wu; Eric A Hoffman; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2012-10-10       Impact factor: 10.048

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  15 in total

1.  Non-invasive endothelial function assessment using digital reactive hyperaemia correlates with three-dimensional intravascular ultrasound and virtual histology-derived plaque volume and plaque phenotype.

Authors:  Tomas Kovarnik; Stepan Jerabek; Zhi Chen; Andreas Wahle; Ling Zhang; Gabriela Dostalova; Hana Skalicka; Ales Kral; Jan Horak; Milan Sonka; Ales Linhart
Journal:  Kardiol Pol       Date:  2016-05-10       Impact factor: 3.108

2.  LOGISMOS-B: layered optimal graph image segmentation of multiple objects and surfaces for the brain.

Authors:  Ipek Oguz; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2014-02-07       Impact factor: 10.048

3.  Predicting Locations of High-Risk Plaques in Coronary Arteries in Patients Receiving Statin Therapy.

Authors:  Ling Zhang; Andreas Wahle; Zhi Chen; John J Lopez; Tomas Kovarnik; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2017-07-11       Impact factor: 10.048

4.  Heart rate and early progression of cardiac allograft vasculopathy: A prospective study using highly automated 3-D optical coherence tomography analysis.

Authors:  Michal Pazdernik; Dan Wichterle; Zhi Chen; Helena Bedanova; Josef Kautzner; Vojtech Melenovsky; Vladimir Karmazin; Ivan Malek; Peter Stiavnicky; Ales Tomasek; Eva Ozabalova; Jan Krejci; Andreas Wahle; Honghai Zhang; Tomas Kovarnik; Milan Sonka
Journal:  Clin Transplant       Date:  2020-01-09       Impact factor: 2.863

5.  Automated Segmentation of Knee MRI Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative.

Authors:  Satyananda Kashyap; Ipek Oguz; Honghai Zhang; Milan Sonka
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

6.  A novel algorithm for refining cerebral vascular measurements in infants and adults.

Authors:  Li Chen; Stephen R Dager; Dennis W W Shaw; Neva M Corrigan; Mahmud Mossa-Basha; Kristi D Pimentel; Natalia M Kleinhans; Patricia K Kuhl; Jenq-Neng Hwang; Chun Yuan
Journal:  J Neurosci Methods       Date:  2020-04-25       Impact factor: 2.390

7.  LOGISMOS-B for Primates: Primate Cortical Surface Reconstruction and Thickness Measurement.

Authors:  Ipek Oguz; Martin Styner; Mar Sanchez; Yundi Shi; Milan Sonka
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015

8.  Learning-Based Cost Functions for 3-D and 4-D Multi-Surface Multi-Object Segmentation of Knee MRI: Data From the Osteoarthritis Initiative.

Authors:  Satyananda Kashyap; Honghai Zhang; Karan Rao; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2018-05       Impact factor: 10.048

9.  Fluorescence lifetime imaging and intravascular ultrasound: co-registration study using ex vivo human coronaries.

Authors:  Dimitris Gorpas; Hussain Fatakdawala; Julien Bec; Dinglong Ma; Diego R Yankelevich; Jinyi Qi; Laura Marcu
Journal:  IEEE Trans Med Imaging       Date:  2014-08-21       Impact factor: 10.048

10.  Quantitative 3D Analysis of Coronary Wall Morphology in Heart Transplant Patients: OCT-Assessed Cardiac Allograft Vasculopathy Progression.

Authors:  Zhi Chen; Michal Pazdernik; Honghai Zhang; Andreas Wahle; Zhihui Guo; Helena Bedanova; Josef Kautzner; Vojtech Melenovsky; Tomas Kovarnik; Milan Sonka
Journal:  Med Image Anal       Date:  2018-09-14       Impact factor: 8.545

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