Literature DB >> 23067344

Virtual screening and optimization yield low-nanomolar inhibitors of the tautomerase activity of Plasmodium falciparum macrophage migration inhibitory factor.

Markus K Dahlgren1, Alvaro Baeza Garcia, Alissa A Hare, Julian Tirado-Rives, Lin Leng, Richard Bucala, William L Jorgensen.   

Abstract

The Plasmodium falciparum orthologue of the human cytokine, macrophage migratory inhibitory factor (PfMIF), is produced by the parasite during malaria infection and modulates the host's immune response. As for other MIF orthologues, PfMIF has tautomerase activity, whose inhibition may influence the cytokine activity. To identify small-molecule inhibitors of the tautomerase activity of PfMIF, virtual screening has been performed by docking 2.1 million compounds into the enzymatic site. Assaying of 17 compounds identified four as active. Substructure search for the most potent of these compounds, a 4-phenoxypyridine analogue, identified four additional compounds that were purchased and also shown to be active. Thirty-one additional analogues were then designed, synthesized, and assayed. Three were found to be potent PfMIF tautomerase inhibitors with K(i) of ∼40 nM; they are also highly selective with K(i) > 100 μM for human MIF.

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Year:  2012        PMID: 23067344      PMCID: PMC3509768          DOI: 10.1021/jm301269s

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  29 in total

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Authors:  Yoonsang Cho; Gregg V Crichlow; Jon J Vermeire; Lin Leng; Xin Du; Michael E Hodsdon; Richard Bucala; Michael Cappello; Matt Gross; Federico Gaeta; Kirk Johnson; Elias J Lolis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-08       Impact factor: 11.205

2.  Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.

Authors:  Richard A Friesner; Jay L Banks; Robert B Murphy; Thomas A Halgren; Jasna J Klicic; Daniel T Mainz; Matthew P Repasky; Eric H Knoll; Mee Shelley; Jason K Perry; David E Shaw; Perry Francis; Peter S Shenkin
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

3.  ZINC--a free database of commercially available compounds for virtual screening.

Authors:  John J Irwin; Brian K Shoichet
Journal:  J Chem Inf Model       Date:  2005 Jan-Feb       Impact factor: 4.956

4.  Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes.

Authors:  Richard A Friesner; Robert B Murphy; Matthew P Repasky; Leah L Frye; Jeremy R Greenwood; Thomas A Halgren; Paul C Sanschagrin; Daniel T Mainz
Journal:  J Med Chem       Date:  2006-10-19       Impact factor: 7.446

5.  E/Z Energetics for Molecular Modeling and Design.

Authors:  John P Terhorst; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2010-09-14       Impact factor: 6.006

6.  New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays.

Authors:  Jonathan B Baell; Georgina A Holloway
Journal:  J Med Chem       Date:  2010-04-08       Impact factor: 7.446

7.  Development and validation of a genetic algorithm for flexible docking.

Authors:  G Jones; P Willett; R C Glen; A R Leach; R Taylor
Journal:  J Mol Biol       Date:  1997-04-04       Impact factor: 5.469

8.  Methyl effects on protein-ligand binding.

Authors:  Cheryl S Leung; Siegfried S F Leung; Julian Tirado-Rives; William L Jorgensen
Journal:  J Med Chem       Date:  2012-04-23       Impact factor: 7.446

9.  Discovery of human macrophage migration inhibitory factor (MIF)-CD74 antagonists via virtual screening.

Authors:  Zoe Cournia; Lin Leng; Sunilkumar Gandavadi; Xin Du; Richard Bucala; William L Jorgensen
Journal:  J Med Chem       Date:  2009-01-22       Impact factor: 7.446

10.  Functional characterization of the Plasmodium falciparum and P. berghei homologues of macrophage migration inhibitory factor.

Authors:  Kevin D Augustijn; Robert Kleemann; Joanne Thompson; Teake Kooistra; Carina E Crawford; Sarah E Reece; Arnab Pain; Arjan H G Siebum; Chris J Janse; Andrew P Waters
Journal:  Infect Immun       Date:  2006-12-11       Impact factor: 3.441

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  11 in total

1.  Characterization of biaryl torsional energetics and its treatment in OPLS all-atom force fields.

Authors:  Markus K Dahlgren; Patric Schyman; Julian Tirado-Rives; William L Jorgensen
Journal:  J Chem Inf Model       Date:  2013-05-13       Impact factor: 4.956

2.  Spirohexenolide A targets human macrophage migration inhibitory factor (hMIF).

Authors:  Wei-Lun Yu; Brian D Jones; Minjin Kang; Justin C Hammons; James J La Clair; Michael D Burkart
Journal:  J Nat Prod       Date:  2013-05-09       Impact factor: 4.050

Review 3.  The non-mammalian MIF superfamily.

Authors:  Amanda Sparkes; Patrick De Baetselier; Kim Roelants; Carl De Trez; Stefan Magez; Jo A Van Ginderachter; Geert Raes; Richard Bucala; Benoît Stijlemans
Journal:  Immunobiology       Date:  2016-10-12       Impact factor: 3.144

4.  Discovery of novel MIF inhibitors that attenuate microglial inflammatory activation by structures-based virtual screening and in vitro bioassays.

Authors:  Yu Zhang; Lei Xu; Yao Zhang; Jie Pan; Pu-Qing Wang; Sheng Tian; Huan-Ting Li; Bo-Wen Gao; Ting-Jun Hou; Xue-Chu Zhen; Long-Tai Zheng
Journal:  Acta Pharmacol Sin       Date:  2021-08-24       Impact factor: 7.169

5.  Suppression of Plasmodium MIF-CD74 signaling protects against severe malaria.

Authors:  Alvaro Baeza Garcia; Edwin Siu; Xin Du; Lin Leng; Blandine Franke-Fayard; Chris J Janse; Shanshan W Howland; Laurent Rénia; Elias Lolis; Richard Bucala
Journal:  FASEB J       Date:  2021-12       Impact factor: 5.834

6.  Property-Unmatched Decoys in Docking Benchmarks.

Authors:  Reed M Stein; Ying Yang; Trent E Balius; Matt J O'Meara; Jiankun Lyu; Jennifer Young; Khanh Tang; Brian K Shoichet; John J Irwin
Journal:  J Chem Inf Model       Date:  2021-01-25       Impact factor: 4.956

7.  Crystallographic and receptor binding characterization of Plasmodium falciparum macrophage migration inhibitory factor complexed to two potent inhibitors.

Authors:  Georgios Pantouris; Deepa Rajasekaran; Alvaro Baeza Garcia; Victor G Ruiz; Lin Leng; William L Jorgensen; Richard Bucala; Elias J Lolis
Journal:  J Med Chem       Date:  2014-10-08       Impact factor: 7.446

8.  Impact of MIF gene promoter polymorphism on F508del cystic fibrosis patients.

Authors:  Paola Melotti; Andrea Mafficini; Patrick Lebecque; Myriam Ortombina; Teresinha Leal; Emily Pintani; Xavier Pepermans; Claudio Sorio; Baroukh Maurice Assael
Journal:  PLoS One       Date:  2014-12-12       Impact factor: 3.240

9.  Identification of Novel Smoothened Ligands Using Structure-Based Docking.

Authors:  Celine Lacroix; Inbar Fish; Hayarpi Torosyan; Pranavan Parathaman; John J Irwin; Brian K Shoichet; Stephane Angers
Journal:  PLoS One       Date:  2016-08-04       Impact factor: 3.240

10.  Roles for ordered and bulk solvent in ligand recognition and docking in two related cavities.

Authors:  Sarah Barelier; Sarah E Boyce; Inbar Fish; Marcus Fischer; David B Goodin; Brian K Shoichet
Journal:  PLoS One       Date:  2013-07-18       Impact factor: 3.240

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