Literature DB >> 23065648

Resting state fMRI-guided fiber clustering: methods and applications.

Bao Ge1, Lei Guo, Tuo Zhang, Xintao Hu, Junwei Han, Tianming Liu.   

Abstract

Clustering streamline fibers derived from diffusion tensor imaging (DTI) data into functionally meaningful bundles with group-wise correspondences across individuals and populations has been a fundamental step for tract-based analysis of white matter integrity and brain connectivity modeling. Many approaches of fiber clustering reported in the literature so far used geometric and/or anatomic information derived from structural MRI and/or DTI data only. In this paper, we take a novel, alternative multimodal approach of combining resting state fMRI (rsfMRI) and DTI data, and propose to use functional coherence as the criterion to guide the clustering of fibers derived from DTI tractography. Specifically, the functional coherence between two streamline fibers is defined as their rsfMRI time series' correlations, and the affinity propagation (AP) algorithm is used to cluster DTI-derived streamline fibers into bundles. Currently, we use the corpus callosum (CC) fibers, which are the largest fiber bundle in the brain, as a test-bed for methodology development and validation. Our experimental results have shown that the proposed rsfMRI-guided fiber clustering method can achieve functionally homogeneous bundles that are reasonably consistent across individuals and populations, suggesting the close relationship between structural connectivity and brain function. The clustered fiber bundles were evaluated and validated via the benchmark data provided by task-based fMRI, via reproducibility studies, and via comparison with other methods. Finally, we have applied the proposed framework on a multimodal rsfMRI/DTI dataset of schizophrenia (SZ) and reproducible results were obtained.

Entities:  

Mesh:

Year:  2013        PMID: 23065648      PMCID: PMC3908549          DOI: 10.1007/s12021-012-9169-7

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  43 in total

Review 1.  Processing and visualization for diffusion tensor MRI.

Authors:  C-F Westin; S E Maier; H Mamata; A Nabavi; F A Jolesz; R Kikinis
Journal:  Med Image Anal       Date:  2002-06       Impact factor: 8.545

2.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

3.  Knowledge-based classification of neuronal fibers in entire brain.

Authors:  Yan Xia; U Turken; Susan L Whitfield-Gabrieli; John D Gabrieli
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

4.  Analysis of brain white matter via fiber tract modeling.

Authors:  Guido Gerig; Sylvain Gouttard; Isabelle Corouge
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2004

Review 5.  Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging.

Authors:  Michael D Fox; Marcus E Raichle
Journal:  Nat Rev Neurosci       Date:  2007-09       Impact factor: 34.870

6.  Defining functional areas in individual human brains using resting functional connectivity MRI.

Authors:  Alexander L Cohen; Damien A Fair; Nico U F Dosenbach; Francis M Miezin; Donna Dierker; David C Van Essen; Bradley L Schlaggar; Steven E Petersen
Journal:  Neuroimage       Date:  2008-03-25       Impact factor: 6.556

7.  Group-wise consistent parcellation of gyri via adaptive multi-view spectral clustering of fiber shapes.

Authors:  Hanbo Chen; Xiao Cai; Dajiang Zhu; Feiping Nie; Tianming Liu; Heng Huang
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

8.  Axonal fiber terminations concentrate on gyri.

Authors:  Jingxin Nie; Lei Guo; Kaiming Li; Yonghua Wang; Guojun Chen; Longchuan Li; Hanbo Chen; Fan Deng; Xi Jiang; Tuo Zhang; Ling Huang; Carlos Faraco; Degang Zhang; Cong Guo; Pew-Thian Yap; Xintao Hu; Gang Li; Jinglei Lv; Yixuan Yuan; Dajiang Zhu; Junwei Han; Dean Sabatinelli; Qun Zhao; L Stephen Miller; Bingqian Xu; Ping Shen; Simon Platt; Dinggang Shen; Xiaoping Hu; Tianming Liu
Journal:  Cereb Cortex       Date:  2011-12-20       Impact factor: 5.357

9.  Shape and size of the corpus callosum in schizophrenia and schizotypal personality disorder.

Authors:  J E Downhill; M S Buchsbaum; T Wei; J Spiegel-Cohen; E A Hazlett; M M Haznedar; J Silverman; L J Siever
Journal:  Schizophr Res       Date:  2000-05-05       Impact factor: 4.939

10.  Reconstruction of central cortical surface from brain MRI images: method and application.

Authors:  Tianming Liu; Jingxin Nie; Ashley Tarokh; Lei Guo; Stephen T C Wong
Journal:  Neuroimage       Date:  2007-12-27       Impact factor: 6.556

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  5 in total

1.  Functional clustering of whole brain white matter fibers.

Authors:  Zhipeng Yang; Xiaojie Li; Jiliu Zhou; Xi Wu; Zhaohua Ding
Journal:  J Neurosci Methods       Date:  2020-02-04       Impact factor: 2.390

2.  Fiber clustering versus the parcellation-based connectome.

Authors:  Lauren J O'Donnell; Alexandra J Golby; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2013-04-28       Impact factor: 6.556

3.  Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder.

Authors:  Ye Wu; Fan Zhang; Nikos Makris; Yuping Ning; Isaiah Norton; Shenglin She; Hongjun Peng; Yogesh Rathi; Yuanjing Feng; Huawang Wu; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-07-06       Impact factor: 6.556

4.  Construction of multi-scale consistent brain networks: methods and applications.

Authors:  Bao Ge; Yin Tian; Xintao Hu; Hanbo Chen; Dajiang Zhu; Tuo Zhang; Junwei Han; Lei Guo; Tianming Liu
Journal:  PLoS One       Date:  2015-04-13       Impact factor: 3.240

5.  Tracking the Brain State Transition Process of Dynamic Function Connectivity Based on Resting State fMRI.

Authors:  Chang Liu; Jie Xue; Xu Cheng; Weiwei Zhan; Xin Xiong; Bin Wang
Journal:  Comput Intell Neurosci       Date:  2019-10-07
  5 in total

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