Literature DB >> 23064340

Exploration of the genomic diversity and core genome of the Bifidobacterium adolescentis phylogenetic group by means of a polyphasic approach.

Sabrina Duranti1, Francesca Turroni, Christian Milani, Elena Foroni, Francesca Bottacini, Fabio Dal Bello, Alberto Ferrarini, Massimo Delledonne, Douwe van Sinderen, Marco Ventura.   

Abstract

In the current work, we describe genome diversity and core genome sequences among representatives of three bifidobacterial species, i.e., Bifidobacterium adolescentis, Bifidobacterium catenulatum, and Bifidobacterium pseudocatenulatum, by employing a polyphasic approach involving analysis of 16S rRNA gene and 16S-23S internal transcribed spacer (ITS) sequences, pulsed-field gel electrophoresis (PFGE), and comparative genomic hybridization (CGH) assays.

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Year:  2012        PMID： 23064340      PMCID： PMC3536097          DOI： 10.1128/AEM.02467-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  36 in total

1.  Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging.

Authors:  Francesca Turroni; Francesca Bottacini; Elena Foroni; Imke Mulder; Jae-Han Kim; Aldert Zomer; Borja Sánchez; Alessandro Bidossi; Alberto Ferrarini; Vanessa Giubellini; Massimo Delledonne; Bernard Henrissat; Pedro Coutinho; Marco Oggioni; Gerald F Fitzgerald; David Mills; Abelardo Margolles; Denise Kelly; Douwe van Sinderen; Marco Ventura
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

2.  Similarity and differences in the Lactobacillus acidophilus group identified by polyphasic analysis and comparative genomics.

Authors:  Bernard Berger; R David Pridmore; Caroline Barretto; Françoise Delmas-Julien; Kerstin Schreiber; Fabrizio Arigoni; Harald Brüssow
Journal:  J Bacteriol       Date:  2006-12-01       Impact factor: 3.490

3.  The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.

Authors:  Mark A Schell; Maria Karmirantzou; Berend Snel; David Vilanova; Bernard Berger; Gabriella Pessi; Marie-Camille Zwahlen; Frank Desiere; Peer Bork; Michele Delley; R David Pridmore; Fabrizio Arigoni
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-15       Impact factor: 11.205

Review 4.  Lessons from the genomes of bifidobacteria.

Authors:  Adrianne Klijn; Annick Mercenier; Fabrizio Arigoni
Journal:  FEMS Microbiol Rev       Date:  2005-08       Impact factor: 16.408

5.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

6.  Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04.

Authors:  Rodolphe Barrangou; Elizabeth P Briczinski; Lindsay L Traeger; Joseph R Loquasto; Melissa Richards; Philippe Horvath; Anne-Claire Coûté-Monvoisin; Gregory Leyer; Snjezana Rendulic; James L Steele; Jeffery R Broadbent; Taylor Oberg; Edward G Dudley; Stephan Schuster; Dennis A Romero; Robert F Roberts
Journal:  J Bacteriol       Date:  2009-04-17       Impact factor: 3.490

7.  The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome.

Authors:  D A Sela; J Chapman; A Adeuya; J H Kim; F Chen; T R Whitehead; A Lapidus; D S Rokhsar; C B Lebrilla; J B German; N P Price; P M Richardson; D A Mills
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-24       Impact factor: 11.205

8.  Intra-species diversity between seven Bifidobacterium adolescentis strains identified by genome-wide tiling array analysis.

Authors:  Kazumasa Yasui; Mototsugu Tabata; Satoki Yamada; Takashi Abe; Toshimichi Ikemura; Ro Osawa; Tohru Suzuki
Journal:  Biosci Biotechnol Biochem       Date:  2009-06-07       Impact factor: 2.043

9.  Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori.

Authors:  R A Alm; L S Ling; D T Moir; B L King; E D Brown; P C Doig; D R Smith; B Noonan; B C Guild; B L deJonge; G Carmel; P J Tummino; A Caruso; M Uria-Nickelsen; D M Mills; C Ives; R Gibson; D Merberg; S D Mills; Q Jiang; D E Taylor; G F Vovis; T J Trust
Journal:  Nature       Date:  1999-01-14       Impact factor: 49.962

10.  Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth.

Authors:  Ju-Hoon Lee; V N Karamychev; S A Kozyavkin; D Mills; A R Pavlov; N V Pavlova; N N Polouchine; P M Richardson; V V Shakhova; A I Slesarev; B Weimer; D J O'Sullivan
Journal:  BMC Genomics       Date:  2008-05-27       Impact factor: 3.969
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  5 in total

1.  The Comparative Analysis of Genomic Diversity and Genes Involved in Carbohydrate Metabolism of Eighty-Eight Bifidobacterium pseudocatenulatum Isolates from Different Niches of China.

Authors:  Guopeng Lin; Qian Liu; Luyao Wang; Haitao Li; Jianxin Zhao; Hao Zhang; Gang Wang; Wei Chen
Journal:  Nutrients       Date:  2022-06-04       Impact factor: 6.706

Review 2.  Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment.

Authors:  Christian Milani; Francesca Turroni; Sabrina Duranti; Gabriele Andrea Lugli; Leonardo Mancabelli; Chiara Ferrario; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2015-11-20       Impact factor: 4.792

3.  Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems.

Authors:  A O'Callaghan; F Bottacini; M O'Connell Motherway; D van Sinderen
Journal:  BMC Genomics       Date:  2015-10-21       Impact factor: 3.969

4.  Bifidobacterium adolescentis Is Effective in Relieving Type 2 Diabetes and May Be Related to Its Dominant Core Genome and Gut Microbiota Modulation Capacity.

Authors:  Xin Qian; Qian Si; Guopeng Lin; Minmin Zhu; Jingyu Lu; Hao Zhang; Gang Wang; Wei Chen
Journal:  Nutrients       Date:  2022-06-15       Impact factor: 6.706

5.  The Genome Sequence of Bifidobacterium moukalabense DSM 27321 Highlights the Close Phylogenetic Relatedness with the Bifidobacterium dentium Taxon.

Authors:  Gabriele Andrea Lugli; Sabrina Duranti; Christian Milani; Francesca Turroni; Alice Viappiani; Marta Mangifesta; Douwe van Sinderen; Marco Ventura
Journal:  Genome Announc       Date:  2014-02-20
  5 in total

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