Literature DB >> 23062351

N-Ras forms dimers at POPC membranes.

Jörn Güldenhaupt1, Till Rudack, Peter Bachler, Daniel Mann, Gemma Triola, Herbert Waldmann, Carsten Kötting, Klaus Gerwert.   

Abstract

Ras is a central regulator of cellular signaling pathways. It is mutated in 20-30% of human tumors. To perform its function, Ras has to be bound to a membrane by a posttranslationally attached lipid anchor. Surprisingly, we identified here dimerization of membrane anchored Ras by combining attenuated total reflectance Fourier transform infrared spectroscopy, biomolecular simulations, and Förster resonance energy transfer experiments. By analyzing x-ray structural models and molecular-dynamics simulations, we propose a dimerization interface between α-helices 4 and 5 and the loop between β2 and β3. This seems to explain why the residues D47, E49, R135, R161, and R164 of this interface are influencing Ras signaling in cellular physiological experiments, although they are not positioned in the catalytic site. Dimerization could catalyze nanoclustering, which is well accepted for membrane-bound Ras. The interface could provide a new target for a seemingly novel type of small molecule interfering with signal transduction in oncogenic Ras mutants.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23062351      PMCID: PMC3471449          DOI: 10.1016/j.bpj.2012.08.043

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  46 in total

1.  Orientation of the infrared transition moments for an alpha-helix.

Authors:  D Marsh; M Müller; F J Schmitt
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

2.  Formation of the Ras dimer is essential for Raf-1 activation.

Authors:  K Inouye; S Mizutani; H Koide; Y Kaziro
Journal:  J Biol Chem       Date:  2000-02-11       Impact factor: 5.157

3.  NMR characterization of full-length farnesylated and non-farnesylated H-Ras and its implications for Raf activation.

Authors:  Roopa Thapar; Jason G Williams; Sharon L Campbell
Journal:  J Mol Biol       Date:  2004-11-05       Impact factor: 5.469

4.  Structural model of the membrane-bound C terminus of lipid-modified human N-ras protein.

Authors:  Guido Reuther; Kui-Thong Tan; Julia Köhler; Christine Nowak; André Pampel; Klaus Arnold; Jürgen Kuhlmann; Herbert Waldmann; Daniel Huster
Journal:  Angew Chem Int Ed Engl       Date:  2006-08-11       Impact factor: 15.336

5.  On the mechanism of hydrolysis of phosphate monoesters dianions in solutions and proteins.

Authors:  Marco Klähn; Edina Rosta; Arieh Warshel
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

6.  Structure and dynamics of the full-length lipid-modified H-Ras protein in a 1,2-dimyristoylglycero-3-phosphocholine bilayer.

Authors:  Alemayehu A Gorfe; Michael Hanzal-Bayer; Daniel Abankwa; John F Hancock; J Andrew McCammon
Journal:  J Med Chem       Date:  2007-01-31       Impact factor: 7.446

Review 7.  The guanine nucleotide-binding switch in three dimensions.

Authors:  I R Vetter; A Wittinghofer
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

8.  Galectin-1 is a novel structural component and a major regulator of h-ras nanoclusters.

Authors:  Liron Belanis; Sarah J Plowman; Barak Rotblat; John F Hancock; Yoel Kloog
Journal:  Mol Biol Cell       Date:  2008-01-30       Impact factor: 4.138

Review 9.  Ras acylation, compartmentalization and signaling nanoclusters (Review).

Authors:  Yoav I Henis; John F Hancock; Ian A Prior
Journal:  Mol Membr Biol       Date:  2008-12-27       Impact factor: 2.857

10.  Membrane-dependent signal integration by the Ras activator Son of sevenless.

Authors:  Jodi Gureasko; William J Galush; Sean Boykevisch; Holger Sondermann; Dafna Bar-Sagi; Jay T Groves; John Kuriyan
Journal:  Nat Struct Mol Biol       Date:  2008-05-04       Impact factor: 15.369

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  73 in total

1.  The Ras G Domain Lacks the Intrinsic Propensity to Form Dimers.

Authors:  Elizaveta A Kovrigina; Azamat R Galiakhmetov; Evgenii L Kovrigin
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

2.  Seeing is believing: Ras dimers observed in live cells.

Authors:  Mark R Philips; Channing J Der
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-30       Impact factor: 11.205

Review 3.  MicroRNA-Based Therapeutic Strategies for Targeting Mutant and Wild Type RAS in Cancer.

Authors:  Sriganesh B Sharma; John Michael Ruppert
Journal:  Drug Dev Res       Date:  2015-08-18       Impact factor: 4.360

Review 4.  Drugging Ras GTPase: a comprehensive mechanistic and signaling structural view.

Authors:  Shaoyong Lu; Hyunbum Jang; Shuo Gu; Jian Zhang; Ruth Nussinov
Journal:  Chem Soc Rev       Date:  2016-07-11       Impact factor: 54.564

Review 5.  RAS-targeted therapies: is the undruggable drugged?

Authors:  Amanda R Moore; Scott C Rosenberg; Frank McCormick; Shiva Malek
Journal:  Nat Rev Drug Discov       Date:  2020-06-11       Impact factor: 84.694

6.  The small GTPases K-Ras, N-Ras, and H-Ras have distinct biochemical properties determined by allosteric effects.

Authors:  Christian W Johnson; Derion Reid; Jillian A Parker; Shores Salter; Ryan Knihtila; Petr Kuzmic; Carla Mattos
Journal:  J Biol Chem       Date:  2017-06-19       Impact factor: 5.157

7.  Spatiotemporal Analysis of K-Ras Plasma Membrane Interactions Reveals Multiple High Order Homo-oligomeric Complexes.

Authors:  Suparna Sarkar-Banerjee; Abdallah Sayyed-Ahmad; Priyanka Prakash; Kwang-Jin Cho; M Neal Waxham; John F Hancock; Alemayehu A Gorfe
Journal:  J Am Chem Soc       Date:  2017-09-18       Impact factor: 15.419

8.  Inhibition of RAS: proven and potential vulnerabilities.

Authors:  Mariyam Zuberi; Imran Khan; John P O'Bryan
Journal:  Biochem Soc Trans       Date:  2020-10-30       Impact factor: 5.407

9.  Oncogenic K-Ras Binds to an Anionic Membrane in Two Distinct Orientations: A Molecular Dynamics Analysis.

Authors:  Priyanka Prakash; Yong Zhou; Hong Liang; John F Hancock; Alemayehu A Gorfe
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

10.  Overview of simulation studies on the enzymatic activity and conformational dynamics of the GTPase Ras.

Authors:  Priyanka Prakash; Alemayehu A Gorfe
Journal:  Mol Simul       Date:  2014-03-19       Impact factor: 2.178

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