Literature DB >> 23047735

Advances in tomography: probing the molecular architecture of cells.

Karen Fridman1, Asaf Mader, Monika Zwerger, Natalie Elia, Ohad Medalia.   

Abstract

Visualizing the dynamic molecular architecture of cells is instrumental for answering fundamental questions in cellular and structural biology. Although modern microscopy techniques, including fluorescence and conventional electron microscopy, have allowed us to gain insights into the molecular organization of cells, they are limited in their ability to visualize multicomponent complexes in their native environment. Cryo-electron tomography (cryo-ET) allows cells, and the macromolecular assemblies contained within, to be reconstructed in situ, at a resolution of 2-6 nm. By combining cryo-ET with super-resolution fluorescence microscopy approaches, it should be possible to localize proteins with high precision inside cells and so elucidate a more realistic view of cellular processes. Thus, cryo-ET may bridge the resolution gap between cellular and structural biology.

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Year:  2012        PMID: 23047735     DOI: 10.1038/nrm3453

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  96 in total

1.  Adhesions of fibroblasts to substratum during contact inhibition observed by interference reflection microscopy.

Authors:  M Abercrombie; G A Dunn
Journal:  Exp Cell Res       Date:  1975-04       Impact factor: 3.905

Review 2.  From words to literature in structural proteomics.

Authors:  Andrej Sali; Robert Glaeser; Thomas Earnest; Wolfgang Baumeister
Journal:  Nature       Date:  2003-03-13       Impact factor: 49.962

3.  Cryo-electron microscopy of vitreous sections of native biological cells and tissues.

Authors:  Ashraf Al-Amoudi; Lars P O Norlen; Jacques Dubochet
Journal:  J Struct Biol       Date:  2004-10       Impact factor: 2.867

4.  Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution.

Authors:  Anna Löschberger; Sebastian van de Linde; Marie-Christine Dabauvalle; Bernd Rieger; Mike Heilemann; Georg Krohne; Markus Sauer
Journal:  J Cell Sci       Date:  2012-02-01       Impact factor: 5.285

5.  Structural dissection of Ebola virus and its assembly determinants using cryo-electron tomography.

Authors:  Tanmay A M Bharat; Takeshi Noda; James D Riches; Verena Kraehling; Larissa Kolesnikova; Stephan Becker; Yoshihiro Kawaoka; John A G Briggs
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-27       Impact factor: 11.205

6.  Comparative structural analysis of eukaryotic flagella and cilia from Chlamydomonas, Tetrahymena, and sea urchins.

Authors:  Gaia Pigino; Aditi Maheshwari; Khanh Huy Bui; Chikako Shingyoji; Shinji Kamimura; Takashi Ishikawa
Journal:  J Struct Biol       Date:  2012-03-03       Impact factor: 2.867

7.  Fine structure of granal thylakoid membrane organization using cryo electron tomography.

Authors:  Roman Kouřil; Gert T Oostergetel; Egbert J Boekema
Journal:  Biochim Biophys Acta       Date:  2010-11-24

8.  Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography.

Authors:  Friedrich Förster; Ohad Medalia; Nathan Zauberman; Wolfgang Baumeister; Deborah Fass
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-17       Impact factor: 11.205

9.  Chromatin organization and radio resistance in the bacterium Gemmata obscuriglobus.

Authors:  Arnon Lieber; Andrew Leis; Ariel Kushmaro; Abraham Minsky; Ohad Medalia
Journal:  J Bacteriol       Date:  2008-12-12       Impact factor: 3.490

10.  Nuclear pore complex number and distribution throughout the Saccharomyces cerevisiae cell cycle by three-dimensional reconstruction from electron micrographs of nuclear envelopes.

Authors:  M Winey; D Yarar; T H Giddings; D N Mastronarde
Journal:  Mol Biol Cell       Date:  1997-11       Impact factor: 4.138

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  13 in total

Review 1.  Minicells, Back in Fashion.

Authors:  Madeline M Farley; Bo Hu; William Margolin; Jun Liu
Journal:  J Bacteriol       Date:  2016-03-31       Impact factor: 3.490

Review 2.  Toward correlating structure and mechanics of platelets.

Authors:  Simona Sorrentino; Jan-Dirk Studt; Melanie Bokstad Horev; Ohad Medalia; K Tanuj Sapra
Journal:  Cell Adh Migr       Date:  2016-04-22       Impact factor: 3.405

Review 3.  A new view into prokaryotic cell biology from electron cryotomography.

Authors:  Catherine M Oikonomou; Yi-Wei Chang; Grant J Jensen
Journal:  Nat Rev Microbiol       Date:  2016-02-29       Impact factor: 60.633

Review 4.  Incisive imaging and computation for cellular mysteries: lessons from abscission.

Authors:  Natalie Elia; Carolyn Ott; Jennifer Lippincott-Schwartz
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

Review 5.  From lamins to lamina: a structural perspective.

Authors:  Monika Zwerger; Ohad Medalia
Journal:  Histochem Cell Biol       Date:  2013-06-07       Impact factor: 4.304

Review 6.  Electron Tomography: A Three-Dimensional Analytic Tool for Hard and Soft Materials Research.

Authors:  Peter Ercius; Osama Alaidi; Matthew J Rames; Gang Ren
Journal:  Adv Mater       Date:  2015-06-18       Impact factor: 30.849

7.  PCASSO: a fast and efficient Cα-based method for accurately assigning protein secondary structure elements.

Authors:  Sean M Law; Aaron T Frank; Charles L Brooks
Journal:  J Comput Chem       Date:  2014-07-04       Impact factor: 3.376

Review 8.  Broken nuclei--lamins, nuclear mechanics, and disease.

Authors:  Patricia M Davidson; Jan Lammerding
Journal:  Trends Cell Biol       Date:  2013-12-02       Impact factor: 20.808

9.  CT brush and CancerZap!: two video games for computed tomography dose minimization.

Authors:  Graham Alvare; Richard Gordon
Journal:  Theor Biol Med Model       Date:  2015-05-12       Impact factor: 2.432

10.  Unraveling the structure of viral replication complexes at super-resolution.

Authors:  Olga Linnik; Johannes Liesche; Jens Tilsner; Karl J Oparka
Journal:  Front Plant Sci       Date:  2013-01-31       Impact factor: 5.753

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