Literature DB >> 23047063

A novel molecular mechanism in human genetic disease: a DNA repeat-derived lncRNA.

Daphne S Cabianca1, Valentina Casa, Davide Gabellini.   

Abstract

Two thirds of the human genome is composed of repetitive sequences. Despite their prevalence, DNA repeats are largely ignored. The vast majority of our genome is transcribed to produce non protein-coding RNAs. Among these, long non protein-coding RNAs represent the most prevalent and functionally diverse class. The relevance of the non protein-coding genome to human disease has mainly been studied regarding the altered microRNA expression and function in human cancer. On the contrary, the elucidation of the involvement of long non-coding RNAs in disease is only in its infancy. We have recently found that a chromatin associated, long non protein-coding RNA regulates a Polycomb/Trithorax epigenetic switch at the basis of the repeat associated facioscapulohumeral muscular dystrophy, a common muscle disorder. Based on this, we propose that long non-coding RNAs produced by repetitive sequences contribute in shaping the epigenetic landscape in normal human physiology and in disease.

Entities:  

Keywords:  chromatin; muscular dystrophy; non protein-coding RNA; polycomb; repetitive element; trithorax

Mesh:

Substances:

Year:  2012        PMID: 23047063      PMCID: PMC3583850          DOI: 10.4161/rna.21922

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  94 in total

1.  Chromosomal silencing and localization are mediated by different domains of Xist RNA.

Authors:  Anton Wutz; Theodore P Rasmussen; Rudolf Jaenisch
Journal:  Nat Genet       Date:  2002-01-07       Impact factor: 38.330

2.  Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.

Authors:  Antoine H F M Peters; Stefan Kubicek; Karl Mechtler; Roderick J O'Sullivan; Alwin A H A Derijck; Laura Perez-Burgos; Alexander Kohlmaier; Susanne Opravil; Makoto Tachibana; Yoichi Shinkai; Joost H A Martens; Thomas Jenuwein
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

Review 3.  Gracefully ageing at 50, X-chromosome inactivation becomes a paradigm for RNA and chromatin control.

Authors:  Jeannie T Lee
Journal:  Nat Rev Mol Cell Biol       Date:  2011-11-23       Impact factor: 94.444

4.  H3K36 methylation antagonizes PRC2-mediated H3K27 methylation.

Authors:  Wen Yuan; Mo Xu; Chang Huang; Nan Liu; She Chen; Bing Zhu
Journal:  J Biol Chem       Date:  2011-01-14       Impact factor: 5.157

5.  The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin.

Authors:  Stéphane Bertani; Silvia Sauer; Eugene Bolotin; Frank Sauer
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

6.  Targeted RNA sequencing reveals the deep complexity of the human transcriptome.

Authors:  Tim R Mercer; Daniel J Gerhardt; Marcel E Dinger; Joanna Crawford; Cole Trapnell; Jeffrey A Jeddeloh; John S Mattick; John L Rinn
Journal:  Nat Biotechnol       Date:  2011-11-13       Impact factor: 54.908

7.  Cis and trans effects of the myotonic dystrophy (DM) mutation in a cell culture model.

Authors:  J D Amack; A P Paguio; M S Mahadevan
Journal:  Hum Mol Genet       Date:  1999-10       Impact factor: 6.150

8.  Polycomb complexes act redundantly to repress genomic repeats and genes.

Authors:  Martin Leeb; Diego Pasini; Maria Novatchkova; Markus Jaritz; Kristian Helin; Anton Wutz
Journal:  Genes Dev       Date:  2010-02-01       Impact factor: 11.361

9.  NUP98-NSD1 links H3K36 methylation to Hox-A gene activation and leukaemogenesis.

Authors:  Gang G Wang; Ling Cai; Martina P Pasillas; Mark P Kamps
Journal:  Nat Cell Biol       Date:  2007-06-24       Impact factor: 28.824

10.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

View more
  11 in total

Review 1.  LncRNAs: emerging players in gene regulation and disease pathogenesis.

Authors:  Mina Kazemzadeh; Reza Safaralizadeh; Ayla Valinezhad Orang
Journal:  J Genet       Date:  2015-12       Impact factor: 1.166

Review 2.  Long non-coding RNAs: challenges for diagnosis and therapies.

Authors:  Yolanda Sánchez; Maite Huarte
Journal:  Nucleic Acid Ther       Date:  2013-02       Impact factor: 5.486

3.  Functional role of lncRNA DB327252 in lung cancer.

Authors:  Enwu Xu; Xuanwei Yu; Qian Zeng; Guibin Qiao; Yiwen Xuan; Yong Tang; Qihang Zhu; Jianxing He
Journal:  J Thorac Dis       Date:  2016-10       Impact factor: 2.895

4.  Facioscapulohumeral Muscular Dystrophy: More Complex than it Appears.

Authors:  G Ricci; M Zatz; R Tupler
Journal:  Curr Mol Med       Date:  2014       Impact factor: 2.222

5.  The prognostic value of a seven-lncRNA signature in patients with esophageal squamous cell carcinoma: a lncRNA expression analysis.

Authors:  Nuo-Qing Weng; Jun Chi; Jing Wen; Shi-Juan Mai; Mei-Yin Zhang; Long Huang; Ji Liu; Xian-Zi Yang; Guo-Liang Xu; Jian-Hua Fu; Hui-Yun Wang
Journal:  J Transl Med       Date:  2020-01-31       Impact factor: 5.531

6.  Long-Read Sequencing Improves the Detection of Structural Variations Impacting Complex Non-Coding Elements of the Genome.

Authors:  Ghausia Begum; Ammar Albanna; Asma Bankapur; Nasna Nassir; Richa Tambi; Bakhrom K Berdiev; Hosneara Akter; Noushad Karuvantevida; Barbara Kellam; Deena Alhashmi; Wilson W L Sung; Bhooma Thiruvahindrapuram; Alawi Alsheikh-Ali; Stephen W Scherer; Mohammed Uddin
Journal:  Int J Mol Sci       Date:  2021-02-19       Impact factor: 5.923

Review 7.  Long noncoding RNAs-related diseases, cancers, and drugs.

Authors:  Jen-Yang Tang; Jin-Ching Lee; Yung-Ting Chang; Ming-Feng Hou; Hurng-Wern Huang; Chih-Chuang Liaw; Hsueh-Wei Chang
Journal:  ScientificWorldJournal       Date:  2013-06-06

Review 8.  Noncoding RNAs: emerging players in muscular dystrophies.

Authors:  Germana Falcone; Alessandra Perfetti; Beatrice Cardinali; Fabio Martelli
Journal:  Biomed Res Int       Date:  2014-03-04       Impact factor: 3.411

9.  Increased DUX4 expression during muscle differentiation correlates with decreased SMCHD1 protein levels at D4Z4.

Authors:  Judit Balog; Peter E Thijssen; Sean Shadle; Kirsten R Straasheijm; Patrick J van der Vliet; Yvonne D Krom; Marlinde L van den Boogaard; Annika de Jong; Richard J L F Lemmers; Rabi Tawil; Stephen J Tapscott; Silvère M van der Maarel
Journal:  Epigenetics       Date:  2015       Impact factor: 4.528

10.  Integrated analysis of lncRNA and mRNA expression in rainbow trout families showing variation in muscle growth and fillet quality traits.

Authors:  Ali Ali; Rafet Al-Tobasei; Brett Kenney; Timothy D Leeds; Mohamed Salem
Journal:  Sci Rep       Date:  2018-08-14       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.