Literature DB >> 24457629

Determining the ice-binding planes of antifreeze proteins by fluorescence-based ice plane affinity.

Koli Basu1, Christopher P Garnham, Yoshiyuki Nishimiya, Sakae Tsuda, Ido Braslavsky, Peter Davies.   

Abstract

Antifreeze proteins (AFPs) are expressed in a variety of cold-hardy organisms to prevent or slow internal ice growth. AFPs bind to specific planes of ice through their ice-binding surfaces. Fluorescence-based ice plane affinity (FIPA) analysis is a modified technique used to determine the ice planes to which the AFPs bind. FIPA is based on the original ice-etching method for determining AFP-bound ice-planes. It produces clearer images in a shortened experimental time. In FIPA analysis, AFPs are fluorescently labeled with a chimeric tag or a covalent dye then slowly incorporated into a macroscopic single ice crystal, which has been preformed into a hemisphere and oriented to determine the a- and c-axes. The AFP-bound ice hemisphere is imaged under UV light to visualize AFP-bound planes using filters to block out nonspecific light. Fluorescent labeling of the AFPs allows real-time monitoring of AFP adsorption into ice. The labels have been found not to influence the planes to which AFPs bind. FIPA analysis also introduces the option to bind more than one differently tagged AFP on the same single ice crystal to help differentiate their binding planes. These applications of FIPA are helping to advance our understanding of how AFPs bind to ice to halt its growth and why many AFP-producing organisms express multiple AFP isoforms.

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Year:  2014        PMID: 24457629      PMCID: PMC4089408          DOI: 10.3791/51185

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  30 in total

1.  A mechanism for stabilization of membranes at low temperatures by an antifreeze protein.

Authors:  Melanie M Tomczak; Dirk K Hincha; Sergio D Estrada; Willem F Wolkers; Lois M Crowe; Robert E Feeney; Fern Tablin; John H Crowe
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

2.  The effect of antifreeze proteins and poly(vinyl alcohol) on the nucleation of ice: a preliminary study.

Authors:  C B Holt
Journal:  Cryo Letters       Date:  2003 Sep-Oct       Impact factor: 1.066

3.  Understanding the mechanism of ice binding by type III antifreeze proteins.

Authors:  A A Antson; D J Smith; D I Roper; S Lewis; L S Caves; C S Verma; S L Buckley; P J Lillford; R E Hubbard
Journal:  J Mol Biol       Date:  2001-01-26       Impact factor: 5.469

4.  Crystal structure of an antifreeze polypeptide and its mechanistic implications.

Authors:  D S Yang; M Sax; A Chakrabartty; C L Hew
Journal:  Nature       Date:  1988-05-19       Impact factor: 49.962

5.  Crystal structure of an insect antifreeze protein and its implications for ice binding.

Authors:  Aaron Hakim; Jennifer B Nguyen; Koli Basu; Darren F Zhu; Durga Thakral; Peter L Davies; Farren J Isaacs; Yorgo Modis; Wuyi Meng
Journal:  J Biol Chem       Date:  2013-03-12       Impact factor: 5.157

6.  Adsorption inhibition as a mechanism of freezing resistance in polar fishes.

Authors:  J A Raymond; A L DeVries
Journal:  Proc Natl Acad Sci U S A       Date:  1977-06       Impact factor: 11.205

Review 7.  Antifreeze peptides and glycopeptides in cold-water fishes.

Authors:  A L DeVries
Journal:  Annu Rev Physiol       Date:  1983       Impact factor: 19.318

8.  Adsorption of alpha-helical antifreeze peptides on specific ice crystal surface planes.

Authors:  C A Knight; C C Cheng; A L DeVries
Journal:  Biophys J       Date:  1991-02       Impact factor: 4.033

9.  Beta-helix structure and ice-binding properties of a hyperactive antifreeze protein from an insect.

Authors:  S P Graether; M J Kuiper; S M Gagné; V K Walker; Z Jia; B D Sykes; P L Davies
Journal:  Nature       Date:  2000-07-20       Impact factor: 49.962

10.  New ice-binding face for type I antifreeze protein.

Authors:  J Baardsnes; L H Kondejewski; R S Hodges; H Chao; C Kay; P L Davies
Journal:  FEBS Lett       Date:  1999-12-10       Impact factor: 4.124

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  16 in total

1.  Identification of Plant Ice-binding Proteins Through Assessment of Ice-recrystallization Inhibition and Isolation Using Ice-affinity Purification.

Authors:  Melissa Bredow; Heather E Tomalty; Virginia K Walker
Journal:  J Vis Exp       Date:  2017-05-05       Impact factor: 1.355

2.  Microfluidic Cold-Finger Device for the Investigation of Ice-Binding Proteins.

Authors:  Lotem Haleva; Yeliz Celik; Maya Bar-Dolev; Natalya Pertaya-Braun; Avigail Kaner; Peter L Davies; Ido Braslavsky
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

3.  Putting life on ice: bacteria that bind to frozen water.

Authors:  Maya Bar Dolev; Reut Bernheim; Shuaiqi Guo; Peter L Davies; Ido Braslavsky
Journal:  J R Soc Interface       Date:  2016-08       Impact factor: 4.118

Review 4.  From ice-binding proteins to bio-inspired antifreeze materials.

Authors:  I K Voets
Journal:  Soft Matter       Date:  2017-07-19       Impact factor: 3.679

5.  The interfacial structure of water droplets in a hydrophobic liquid.

Authors:  Nikolay Smolentsev; Wilbert J Smit; Huib J Bakker; Sylvie Roke
Journal:  Nat Commun       Date:  2017-05-24       Impact factor: 14.919

6.  Concentration-dependent oligomerization of an alpha-helical antifreeze polypeptide makes it hyperactive.

Authors:  Sheikh Mahatabuddin; Yuichi Hanada; Yoshiyuki Nishimiya; Ai Miura; Hidemasa Kondo; Peter L Davies; Sakae Tsuda
Journal:  Sci Rep       Date:  2017-02-13       Impact factor: 4.379

7.  Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein.

Authors:  Sheikh Mahatabuddin; Daichi Fukami; Tatsuya Arai; Yoshiyuki Nishimiya; Rumi Shimizu; Chie Shibazaki; Hidemasa Kondo; Motoyasu Adachi; Sakae Tsuda
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

8.  Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.

Authors:  Tatsuya Arai; Yoshiyuki Nishimiya; Yasushi Ohyama; Hidemasa Kondo; Sakae Tsuda
Journal:  Biomolecules       Date:  2019-04-27

9.  Ice recrystallization is strongly inhibited when antifreeze proteins bind to multiple ice planes.

Authors:  Anika T Rahman; Tatsuya Arai; Akari Yamauchi; Ai Miura; Hidemasa Kondo; Yasushi Ohyama; Sakae Tsuda
Journal:  Sci Rep       Date:  2019-02-13       Impact factor: 4.379

10.  An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.

Authors:  Akari Yamauchi; Tatsuya Arai; Hidemasa Kondo; Yuji C Sasaki; Sakae Tsuda
Journal:  Biomolecules       Date:  2020-05-13
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