Literature DB >> 23015713

Genomic and phylogenetic characterization of Brazilian yellow fever virus strains.

Marcio R T Nunes1, Gustavo Palacios, Jedson F Cardoso, Livia C Martins, Edivaldo C Sousa, Clayton P S de Lima, Daniele B A Medeiros, Nazir Savji, Aaloki Desai, Sueli G Rodrigues, Valeria L Carvalho, W Ian Lipkin, Pedro F C Vasconcelos.   

Abstract

Globally, yellow fever virus infects nearly 200,000 people, leading to 30,000 deaths annually. Although the virus is endemic to Latin America, only a single genome from this region has been sequenced. Here, we report 12 Brazilian yellow fever virus complete genomes, their genetic traits, phylogenetic characterization, and phylogeographic dynamics. Variable 3' noncoding region (3'NCR) patterns and specific mutations throughout the open reading frame altered predicted secondary structures. Our findings suggest that whereas the introduction of yellow fever virus in Brazil led to genotype I-predominant dispersal throughout South and Central Americas, genotype II remained confined to Bolivia, Peru, and the western Brazilian Amazon.

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Year:  2012        PMID： 23015713      PMCID： PMC3503022          DOI： 10.1128/JVI.00565-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  41 in total

1.  Molecular characterization of a hamster viscerotropic strain of yellow fever virus.

Authors:  Monica A McArthur; Miguel T Suderman; John-Paul Mutebi; Shu-Yuan Xiao; Alan D T Barrett
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2.  SWISS-MODEL: An automated protein homology-modeling server.

Authors:  Torsten Schwede; Jürgen Kopp; Nicolas Guex; Manuel C Peitsch
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
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4.  Mauve: multiple alignment of conserved genomic sequence with rearrangements.

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Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

Review 5.  Flavivirus genome organization, expression, and replication.

Authors:  T J Chambers; C S Hahn; R Galler; C M Rice
Journal:  Annu Rev Microbiol       Date:  1990       Impact factor: 15.500

6.  [History of the Yellow fever in Brazil].

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Journal:  Rev Bras Malariol Doencas Trop       Date:  1969 Apr-Jun

7.  Geographic distribution and evolution of yellow fever viruses based on direct sequencing of genomic cDNA fragments.

Authors:  L Lepiniec; L Dalgarno; V T Huong; T P Monath; J P Digoutte; V Deubel
Journal:  J Gen Virol       Date:  1994-02       Impact factor: 3.891

8.  Nucleotide sequence variation of the envelope protein gene identifies two distinct genotypes of yellow fever virus.

Authors:  G J Chang; B C Cropp; R M Kinney; D W Trent; D J Gubler
Journal:  J Virol       Date:  1995-09       Impact factor: 5.103

9.  Genetic divergence and dispersal of yellow fever virus, Brazil.

Authors:  Pedro F C Vasconcelos; Juliet E Bryant; Travassos P A da Rosa; Robert B Tesh; Sueli G Rodrigues; Alan D T Barrett
Journal:  Emerg Infect Dis       Date:  2004-09       Impact factor: 6.883

10.  Bayesian phylogeography finds its roots.

Authors:  Philippe Lemey; Andrew Rambaut; Alexei J Drummond; Marc A Suchard
Journal:  PLoS Comput Biol       Date:  2009-09-25       Impact factor: 4.475
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  19 in total

1.  Genetic characterization, molecular epidemiology, and phylogenetic relationships of insect-specific viruses in the taxon Negevirus.

Authors:  Marcio R T Nunes; María Angélica Contreras-Gutierrez; Hilda Guzman; Livia C Martins; Mayla Feitoza Barbirato; Chelsea Savit; Victoria Balta; Sandra Uribe; Rafael Vivero; Juan David Suaza; Hamilton Oliveira; Joaquin P Nunes Neto; Valeria L Carvalho; Sandro Patroca da Silva; Jedson F Cardoso; Rodrigo Santo de Oliveira; Poliana da Silva Lemos; Thomas G Wood; Steven G Widen; Pedro F C Vasconcelos; Durland Fish; Nikos Vasilakis; Robert B Tesh
Journal:  Virology       Date:  2017-02-11       Impact factor: 3.616

2.  Yellow Fever Virus Reemergence and Spread in Southeast Brazil, 2016-2019.

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Journal:  J Virol       Date:  2019-12-12       Impact factor: 5.103

3.  Updating the Phylodynamics of Yellow Fever Virus 2016-2019 Brazilian Outbreak With New 2018 and 2019 São Paulo Genomes.

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Journal:  Front Microbiol       Date:  2022-04-14       Impact factor: 6.064

4.  Isolation of Madre de Dios Virus (Orthobunyavirus; Bunyaviridae), an Oropouche Virus Species Reassortant, from a Monkey in Venezuela.

Authors:  Juan-Carlos Navarro; Dileyvic Giambalvo; Rosa Hernandez; Albert J Auguste; Robert B Tesh; Scott C Weaver; Humberto Montañez; Jonathan Liria; Anderson Lima; Jorge Fernando Soares Travassos da Rosa; Sandro P da Silva; Janaina M Vasconcelos; Rodrigo Oliveira; João L S G Vianez; Marcio R T Nunes
Journal:  Am J Trop Med Hyg       Date:  2016-05-23       Impact factor: 2.345

5.  Discriminating arboviral species.

Authors:  Yiyuan Li; Angela C O'Donnell; Howard Ochman
Journal:  J Gen Virol       Date:  2021-04       Impact factor: 3.891

6.  Spatiotemporal analysis of Guaroa virus diversity, evolution, and spread in South America.

Authors:  Allison Groseth; Kurt R Wollenberg; Veena Mampilli; Taylor Shupert; Carla Weisend; Carolina Guevara; Tadeusz J Kochel; Robert B Tesh; Hideki Ebihara
Journal:  Emerg Infect Dis       Date:  2015-03       Impact factor: 6.883

7.  Enzootic transmission of yellow fever virus, Venezuela.

Authors:  Albert J Auguste; Philippe Lemey; Nicholas A Bergren; Dileyvic Giambalvo; Maria Moncada; Dulce Morón; Rosa Hernandez; Juan-Carlos Navarro; Scott C Weaver
Journal:  Emerg Infect Dis       Date:  2015-01       Impact factor: 6.883

8.  Potential risk of re-emergence of urban transmission of Yellow Fever virus in Brazil facilitated by competent Aedes populations.

Authors:  Dinair Couto-Lima; Yoann Madec; Maria Ignez Bersot; Stephanie Silva Campos; Monique de Albuquerque Motta; Flávia Barreto Dos Santos; Marie Vazeille; Pedro Fernando da Costa Vasconcelos; Ricardo Lourenço-de-Oliveira; Anna-Bella Failloux
Journal:  Sci Rep       Date:  2017-07-07       Impact factor: 4.379

9.  Genomic and epidemiological monitoring of yellow fever virus transmission potential.

Authors:  N R Faria; M U G Kraemer; S C Hill; J Goes de Jesus; R S Aguiar; F C M Iani; J Xavier; J Quick; L du Plessis; S Dellicour; J Thézé; R D O Carvalho; G Baele; C-H Wu; P P Silveira; M B Arruda; M A Pereira; G C Pereira; J Lourenço; U Obolski; L Abade; T I Vasylyeva; M Giovanetti; D Yi; D J Weiss; G R W Wint; F M Shearer; S Funk; B Nikolay; V Fonseca; T E R Adelino; M A A Oliveira; M V F Silva; L Sacchetto; P O Figueiredo; I M Rezende; E M Mello; R F C Said; D A Santos; M L Ferraz; M G Brito; L F Santana; M T Menezes; R M Brindeiro; A Tanuri; F C P Dos Santos; M S Cunha; J S Nogueira; I M Rocco; A C da Costa; S C V Komninakis; V Azevedo; A O Chieppe; E S M Araujo; M C L Mendonça; C C Dos Santos; C D Dos Santos; A M Mares-Guia; R M R Nogueira; P C Sequeira; R G Abreu; M H O Garcia; A L Abreu; O Okumoto; E G Kroon; C F C de Albuquerque; K Lewandowski; S T Pullan; M Carroll; T de Oliveira; E C Sabino; R P Souza; M A Suchard; P Lemey; G S Trindade; B P Drumond; A M B Filippis; N J Loman; S Cauchemez; L C J Alcantara; O G Pybus
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