Literature DB >> 30139911

Genomic and epidemiological monitoring of yellow fever virus transmission potential.

N R Faria1, M U G Kraemer2,3,4, S C Hill2, J Goes de Jesus5, R S Aguiar6, F C M Iani7,8, J Xavier5, J Quick9, L du Plessis2, S Dellicour10, J Thézé2, R D O Carvalho8, G Baele10, C-H Wu11, P P Silveira6, M B Arruda6, M A Pereira7, G C Pereira7, J Lourenço2, U Obolski2, L Abade2,12, T I Vasylyeva2, M Giovanetti5,8, D Yi13, D J Weiss14, G R W Wint2, F M Shearer14, S Funk15, B Nikolay16,17, V Fonseca8,18, T E R Adelino7, M A A Oliveira7, M V F Silva7, L Sacchetto8, P O Figueiredo8, I M Rezende8, E M Mello8, R F C Said19, D A Santos19, M L Ferraz19, M G Brito19, L F Santana19, M T Menezes6, R M Brindeiro6, A Tanuri6, F C P Dos Santos20, M S Cunha20, J S Nogueira20, I M Rocco20, A C da Costa21, S C V Komninakis22,23, V Azevedo8, A O Chieppe24, E S M Araujo5, M C L Mendonça5, C C Dos Santos5, C D Dos Santos5, A M Mares-Guia5, R M R Nogueira5, P C Sequeira5, R G Abreu25, M H O Garcia25, A L Abreu26, O Okumoto26, E G Kroon8, C F C de Albuquerque27, K Lewandowski28, S T Pullan28, M Carroll29, T de Oliveira5,18,30, E C Sabino21, R P Souza20, M A Suchard31,32, P Lemey10, G S Trindade8, B P Drumond8, A M B Filippis5, N J Loman9, S Cauchemez16,17, L C J Alcantara33,8, O G Pybus1.   

Abstract

The yellow fever virus (YFV) epidemic in Brazil is the largest in decades. The recent discovery of YFV in Brazilian Aedes species mosquitos highlights a need to monitor the risk of reestablishment of urban YFV transmission in the Americas. We use a suite of epidemiological, spatial, and genomic approaches to characterize YFV transmission. We show that the age and sex distribution of human cases is characteristic of sylvatic transmission. Analysis of YFV cases combined with genomes generated locally reveals an early phase of sylvatic YFV transmission and spatial expansion toward previously YFV-free areas, followed by a rise in viral spillover to humans in late 2016. Our results establish a framework for monitoring YFV transmission in real time that will contribute to a global strategy to eliminate future YFV epidemics.
Copyright © 2018, American Association for the Advancement of Science.

Entities:  

Mesh：

Year:  2018        PMID： 30139911      PMCID： PMC6874500          DOI： 10.1126/science.aat7115

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


  87 in total

1.  Phylogenetic and evolutionary relationships among yellow fever virus isolates in Africa.

Authors:  J P Mutebi; H Wang; L Li; J E Bryant; A D Barrett
Journal:  J Virol       Date:  2001-08       Impact factor: 5.103

2.  Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty.

Authors:  Guy Baele; Philippe Lemey; Marc A Suchard
Journal:  Syst Biol       Date:  2015-11-01       Impact factor: 15.683

3.  Genome analysis and phylogenetic relationships between east, central and west African isolates of Yellow fever virus.

Authors:  Jana J von Lindern; Sarah Aroner; Nicholas D Barrett; Jason A Wicker; C Todd Davis; Alan D T Barrett
Journal:  J Gen Virol       Date:  2006-04       Impact factor: 3.891

4.  Clinical and epidemiological characteristics of yellow fever in Brazil: analysis of reported cases 1998-2002.

Authors:  Suely Hiromi Tuboi; Zouraide Guerra Antunes Costa; Pedro Fernando da Costa Vasconcelos; Douglas Hatch
Journal:  Trans R Soc Trop Med Hyg       Date:  2006-06-30       Impact factor: 2.184

5.  Yellow fever virus in Haemagogus leucocelaenus and Aedes serratus mosquitoes, southern Brazil, 2008.

Authors:  Jader da C Cardoso; Marco A B de Almeida; Edmilson dos Santos; Daltro F da Fonseca; Maria A M Sallum; Carlos A Noll; Hamilton A de O Monteiro; Ana C R Cruz; Valeria L Carvalho; Eliana V Pinto; Francisco C Castro; Joaquim P Nunes Neto; Maria N O Segura; Pedro F C Vasconcelos
Journal:  Emerg Infect Dis       Date:  2010-12       Impact factor: 6.883

6.  Genetic divergence and dispersal of yellow fever virus, Brazil.

Authors:  Pedro F C Vasconcelos; Juliet E Bryant; Travassos P A da Rosa; Robert B Tesh; Sueli G Rodrigues; Alan D T Barrett
Journal:  Emerg Infect Dis       Date:  2004-09       Impact factor: 6.883

7.  Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study.

Authors:  Moritz U G Kraemer; Nuno R Faria; Robert C Reiner; Nick Golding; Birgit Nikolay; Stephanie Stasse; Michael A Johansson; Henrik Salje; Ousmane Faye; G R William Wint; Matthias Niedrig; Freya M Shearer; Sarah C Hill; Robin N Thompson; Donal Bisanzio; Nuno Taveira; Heinrich H Nax; Bary S R Pradelski; Elaine O Nsoesie; Nicholas R Murphy; Isaac I Bogoch; Kamran Khan; John S Brownstein; Andrew J Tatem; Tulio de Oliveira; David L Smith; Amadou A Sall; Oliver G Pybus; Simon I Hay; Simon Cauchemez
Journal:  Lancet Infect Dis       Date:  2016-12-23       Impact factor: 25.071

8.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

9.  Phylogeography of dengue virus serotype 4, Brazil, 2010-2011.

Authors:  Marcio Roberto Teixeira Nunes; Nuno Rodrigues Faria; Helena Baldez Vasconcelos; Daniele Barbosa de Almeida Medeiros; Clayton Pereira Silva de Lima; Valéria Lima Carvalho; Eliana Vieira Pinto da Silva; Jedson Ferreira Cardoso; Edivaldo Costa Sousa; Keley Nascimento Barbosa Nunes; Sueli Guerreiro Rodrigues; Ana Barroso Abecasis; Marc A Suchard; Philippe Lemey; Pedro Fernando da Costa Vasconcelos
Journal:  Emerg Infect Dis       Date:  2012-11       Impact factor: 6.883

10.  Existing and potential infection risk zones of yellow fever worldwide: a modelling analysis.

Authors:  Freya M Shearer; Joshua Longbottom; Annie J Browne; David M Pigott; Oliver J Brady; Moritz U G Kraemer; Fatima Marinho; Sergio Yactayo; Valdelaine E M de Araújo; Aglaêr A da Nóbrega; Nancy Fullman; Sarah E Ray; Jonathan F Mosser; Jeffrey D Stanaway; Stephen S Lim; Robert C Reiner; Catherine L Moyes; Simon I Hay; Nick Golding
Journal:  Lancet Glob Health       Date:  2018-02-02       Impact factor: 26.763
View more
  105 in total

1.  Yellow Fever: Factors Associated with Death in a Hospital of Reference in Infectious Diseases, São Paulo, Brazil, 2018.

Authors:  Ana Freitas Ribeiro; Roberta Figueiredo Cavalin; Jamal Muhamad Abdul Hamid Suleiman; Jessica Alves da Costa; Marileide Januaria de Vasconcelos; Ceila Maria Sant'Ana Málaque; Jaques Sztajnbok
Journal:  Am J Trop Med Hyg       Date:  2019-07       Impact factor: 2.345

2.  StrainHub: a phylogenetic tool to construct pathogen transmission networks.

Authors:  Adriano de Bernardi Schneider; Colby T Ford; Reilly Hostager; John Williams; Michael Cioce; Ümit V Çatalyürek; Joel O Wertheim; Daniel Janies
Journal:  Bioinformatics       Date:  2020-02-01       Impact factor: 6.937

Review 3.  The continued threat of emerging flaviviruses.

Authors:  Theodore C Pierson; Michael S Diamond
Journal:  Nat Microbiol       Date:  2020-05-04       Impact factor: 17.745

4.  Host-Specific NS5 Ubiquitination Determines Yellow Fever Virus Tropism.

Authors:  Lisa Miorin; Maudry Laurent-Rolle; Giuseppe Pisanelli; Pierre Hendrick Co; Randy A Albrecht; Adolfo García-Sastre; Juliet Morrison
Journal:  J Virol       Date:  2019-06-28       Impact factor: 5.103

5.  Yellow Fever Virus Reemergence and Spread in Southeast Brazil, 2016-2019.

Authors:  Marta Giovanetti; Marcos Cesar Lima de Mendonça; Vagner Fonseca; Maria Angélica Mares-Guia; Allison Fabri; Joilson Xavier; Jaqueline Goes de Jesus; Tiago Gräf; Cintia Damasceno Dos Santos Rodrigues; Carolina Cardoso Dos Santos; Simone Alves Sampaio; Flavia Lowen Levy Chalhoub; Fernanda de Bruycker Nogueira; Julien Theze; Alessandro Pecego Martins Romano; Daniel Garkauskas Ramos; Andre Luiz de Abreu; Wanderson Kleber Oliveira; Rodrigo Fabiano do Carmo Said; Carlos F Campelo de Alburque; Tulio de Oliveira; Carlos Augusto Fernandes; Shirlei Ferreira Aguiar; Alexandre Chieppe; Patrícia Carvalho Sequeira; Nuno Rodrigues Faria; Rivaldo Venâncio Cunha; Luiz Carlos Junior Alcantara; Ana Maria Bispo de Filippis
Journal:  J Virol       Date:  2019-12-12       Impact factor: 5.103

Review 6.  Nanopore sequencing technology, bioinformatics and applications.

Authors:  Yunhao Wang; Yue Zhao; Audrey Bollas; Yuru Wang; Kin Fai Au
Journal:  Nat Biotechnol       Date:  2021-11-08       Impact factor: 54.908

7.  Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework.

Authors:  Guy Baele; Mandev S Gill; Philippe Lemey; Marc A Suchard
Journal:  Wellcome Open Res       Date:  2020-03-30

8.  Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak.

Authors:  E Ogbaini-Emovon; S Günther; S Duraffour; L E Kafetzopoulou; S T Pullan; P Lemey; M A Suchard; D U Ehichioya; M Pahlmann; A Thielebein; J Hinzmann; L Oestereich; D M Wozniak; K Efthymiadis; D Schachten; F Koenig; J Matjeschk; S Lorenzen; S Lumley; Y Ighodalo; D I Adomeh; T Olokor; E Omomoh; R Omiunu; J Agbukor; B Ebo; J Aiyepada; P Ebhodaghe; B Osiemi; S Ehikhametalor; P Akhilomen; M Airende; R Esumeh; E Muoebonam; R Giwa; A Ekanem; G Igenegbale; G Odigie; G Okonofua; R Enigbe; J Oyakhilome; E O Yerumoh; I Odia; C Aire; M Okonofua; R Atafo; E Tobin; D Asogun; N Akpede; P O Okokhere; M O Rafiu; K O Iraoyah; C O Iruolagbe; P Akhideno; C Erameh; G Akpede; E Isibor; D Naidoo; R Hewson; J A Hiscox; R Vipond; M W Carroll; C Ihekweazu; P Formenty; S Okogbenin
Journal:  Science       Date:  2019-01-04       Impact factor: 47.728

9.  Sexual selection theory meets disease vector control: Testing harmonic convergence as a "good genes" signal in Aedes aegypti mosquitoes.

Authors:  Garrett P League; Laura C Harrington; Sylvie A Pitcher; Julie K Geyer; Lindsay L Baxter; Julian Montijo; John G Rowland; Lynn M Johnson; Courtney C Murdock; Lauren J Cator
Journal:  PLoS Negl Trop Dis       Date:  2021-07-02

10.  Promoting Responsible Research and Innovation (RRI) During Brazilian Activities of Genomic and Epidemiological Surveillance of Arboviruses.

Authors:  Marta Giovanetti; Luiz Carlos Junior Alcantara; Alfredo Souza Dorea; Qesya Rodrigues Ferreira; Willian de Almeida Marques; Jose Junior Franca de Barros; Talita Emile Ribeiro Adelino; Stephane Tosta; Hegger Fritsch; Felipe Campos de Melo Iani; Maria Angélica Mares-Guia; Alvaro Salgado; Vagner Fonseca; Joilson Xavier; Elisson Nogueira Lopes; Gilson Carlos Soares; Maria Fernanda de Castro Amarante; Vasco Azevedo; Alícia Kruger; Gustavo Correa Matta; Laisa Liane Paineiras-Domingos; Claudia Colonnello; Ana Maria Bispo de Filippis; Carla Montesano; Vittorio Colizzi; Fernanda Khouri Barreto
Journal:  Front Public Health       Date:  2021-07-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.