Literature DB >> 23012281

Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy.

Biao Tang1, Wei Zhao, Huajun Zheng, Ying Zhuo, Lixin Zhang, Guo-Ping Zhao.   

Abstract

The genome of Amycolatopsis mediterranei S699 was resequenced and assembled de novo. By comparing the sequences of S699 previously released and that of A. mediterranei U32, about 10 kb of major indels was found to differ between the two S699 genomes, and the differences are likely attributable to their different assembly strategies.

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Year:  2012        PMID： 23012281      PMCID： PMC3458657          DOI： 10.1128/JB.01295-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Thioesterases and the premature termination of polyketide chain elongation in rifamycin B biosynthesis by Amycolatopsis mediterranei S699.

Authors:  Y Doi-Katayama; Y J Yoon; C Y Choi; T W Yu; H G Floss; C R Hutchinson
Journal:  J Antibiot (Tokyo)       Date:  2000-05       Impact factor: 2.649

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  GeneMark.hmm: new solutions for gene finding.

Authors:  A V Lukashin; M Borodovsky
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

4.  Two genes, rif15 and rif16, of the rifamycin biosynthetic gene cluster in Amycolatopsis mediterranei likely encode a transketolase and a P450 monooxygenase, respectively, both essential for the conversion of rifamycin SV into B.

Authors:  Hua Yuan; Wei Zhao; Yi Zhong; Jin Wang; Zhongjun Qin; Xiaoming Ding; Guo-Ping Zhao
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2011-10-10       Impact factor: 3.848

5.  Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699.

Authors:  Mansi Verma; Jaspreet Kaur; Mukesh Kumar; Kirti Kumari; Anjali Saxena; Shailly Anand; Aeshna Nigam; Vydianathan Ravi; Saurabh Raghuvanshi; Paramjit Khurana; Akhilesh K Tyagi; Jitendra P Khurana; Rup Lal
Journal:  J Bacteriol       Date:  2011-10       Impact factor: 3.490

6.  Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism.

Authors:  Wei Zhao; Yi Zhong; Hua Yuan; Jin Wang; Huajun Zheng; Ying Wang; Xufeng Cen; Feng Xu; Jie Bai; Xiaobiao Han; Gang Lu; Yongqiang Zhu; Zhihui Shao; Han Yan; Chen Li; Nanqiu Peng; Zilong Zhang; Yunyi Zhang; Wei Lin; Yun Fan; Zhongjun Qin; Yongfei Hu; Baoli Zhu; Shengyue Wang; Xiaoming Ding; Guo-Ping Zhao
Journal:  Cell Res       Date:  2010-06-22       Impact factor: 25.617

7.  Identification of tailoring genes involved in the modification of the polyketide backbone of rifamycin B by Amycolatopsis mediterranei S699.

Authors:  Jun Xu; Eva Wan; Chang-Joon Kim; Heinz G Floss; Taifo Mahmud
Journal:  Microbiology       Date:  2005-08       Impact factor: 2.777

8.  Ansamycin biogenesis: studies on a novel rifamycin isolated from a mutant strain of Nocardia mediterranei.

Authors:  R J White; E Martinelli; G Lancini
Journal:  Proc Natl Acad Sci U S A       Date:  1974-08       Impact factor: 11.205

9.  Rifomycin. XIV. Production of rifomycin B.

Authors:  P MARGALITH; H PAGANI
Journal:  Appl Microbiol       Date:  1961-07

Review 10.  Rifamycins: strain improvement program.

Authors:  R Lal; M Khanna; H Kaur; N Srivastava; K K Tripathi; S Lal
Journal:  Crit Rev Microbiol       Date:  1995       Impact factor: 7.624
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  6 in total

1.  RifZ (AMED_0655) Is a Pathway-Specific Regulator for Rifamycin Biosynthesis in Amycolatopsis mediterranei.

Authors:  Chen Li; Xinqiang Liu; Chao Lei; Han Yan; Zhihui Shao; Ying Wang; Guoping Zhao; Jin Wang; Xiaoming Ding
Journal:  Appl Environ Microbiol       Date:  2017-03-31       Impact factor: 4.792

2.  Genetics and Genomics of the Genus Amycolatopsis.

Authors:  Rashmi Kumari; Priya Singh; Rup Lal
Journal:  Indian J Microbiol       Date:  2016-05-02       Impact factor: 2.461

3.  Application of Hierarchical Clustering to Analyze Solvent-Accessible Surface Area Patterns in Amycolatopsis lipases.

Authors:  Supajit Sraphet; Bagher Javadi
Journal:  Biology (Basel)       Date:  2022-04-24

4.  ContigScape: a Cytoscape plugin facilitating microbial genome gap closing.

Authors:  Biao Tang; Qi Wang; Minjun Yang; Feng Xie; Yongqiang Zhu; Ying Zhuo; Shengyue Wang; Hong Gao; Xiaoming Ding; Lixin Zhang; Guoping Zhao; Huajun Zheng
Journal:  BMC Genomics       Date:  2013-04-30       Impact factor: 3.969

5.  Complete genome sequence and comparative genomic analyses of the vancomycin-producing Amycolatopsis orientalis.

Authors:  Li Xu; He Huang; Wei Wei; Yi Zhong; Biao Tang; Hua Yuan; Li Zhu; Weiyi Huang; Mei Ge; Shen Yang; Huajun Zheng; Weihong Jiang; Daijie Chen; Guo-Ping Zhao; Wei Zhao
Journal:  BMC Genomics       Date:  2014-05-13       Impact factor: 3.969

6.  Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae.

Authors:  Yuriy Rebets; Bogdan Tokovenko; Igor Lushchyk; Christian Rückert; Nestor Zaburannyi; Andreas Bechthold; Jörn Kalinowski; Andriy Luzhetskyy
Journal:  BMC Genomics       Date:  2014-10-10       Impact factor: 3.969
  6 in total

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