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Literature DB >> 21914879

Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699.

Mansi Verma¹, Jaspreet Kaur, Mukesh Kumar, Kirti Kumari, Anjali Saxena, Shailly Anand, Aeshna Nigam, Vydianathan Ravi, Saurabh Raghuvanshi, Paramjit Khurana, Akhilesh K Tyagi, Jitendra P Khurana, Rup Lal.

Abstract

Amycolatopsis mediterranei S699 is an actinomycete that produces an important antibiotic, rifamycin B. Semisynthetic derivatives of rifamycin B are used for the treatment of tuberculosis, leprosy, and AIDS-related mycobacterial infections. Here, we report the complete genome sequence (10.2 Mb) of A. mediterranei S699, with 9,575 predicted coding sequences.

Entities: Chemical Disease Species

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Year: 2011 PMID： 21914879 PMCID： PMC3187414 DOI： 10.1128/JB.05819-11

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

14 in total

1. Thioesterases and the premature termination of polyketide chain elongation in rifamycin B biosynthesis by Amycolatopsis mediterranei S699.

Authors: Y Doi-Katayama; Y J Yoon; C Y Choi; T W Yu; H G Floss; C R Hutchinson
Journal: J Antibiot (Tokyo) Date: 2000-05 Impact factor: 2.649

2. The loading module of rifamycin synthetase is an adenylation-thiolation didomain with substrate tolerance for substituted benzoates.

Authors: S J Admiraal; C T Walsh; C Khosla
Journal: Biochemistry Date: 2001-05-22 Impact factor: 3.162

3. Cloning and sequence analysis of the putative rifamycin polyketide synthase gene cluster from Amycolatopsis mediterranei.

Authors: T Schupp; C Toupet; N Engel; S Goff
Journal: FEMS Microbiol Lett Date: 1998-02-15 Impact factor: 2.742

Review 4. Regulation and manipulation of the gene clusters encoding type-I PKSs.

Authors: R Lal; R Kumari; H Kaur; R Khanna; N Dhingra; D Tuteja
Journal: Trends Biotechnol Date: 2000-06 Impact factor: 19.536

5. Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism.

Authors: Wei Zhao; Yi Zhong; Hua Yuan; Jin Wang; Huajun Zheng; Ying Wang; Xufeng Cen; Feng Xu; Jie Bai; Xiaobiao Han; Gang Lu; Yongqiang Zhu; Zhihui Shao; Han Yan; Chen Li; Nanqiu Peng; Zilong Zhang; Yunyi Zhang; Wei Lin; Yun Fan; Zhongjun Qin; Yongfei Hu; Baoli Zhu; Shengyue Wang; Xiaoming Ding; Guo-Ping Zhao
Journal: Cell Res Date: 2010-06-22 Impact factor: 25.617

6. Biosynthesis of the ansamycin antibiotic rifamycin: deductions from the molecular analysis of the rif biosynthetic gene cluster of Amycolatopsis mediterranei S699.

Authors: P R August; L Tang; Y J Yoon; S Ning; R Müller; T W Yu; M Taylor; D Hoffmann; C G Kim; X Zhang; C R Hutchinson; H G Floss
Journal: Chem Biol Date: 1998-02

7. A proposal for the transfer of Streptomyces mediterranei Margalith and Beretta 1960 to the genus Nocardia as Nocardia mediterranea (Margalith and Beretta) comb. nov.

Authors: J E Thiemann; G Zucco; G Pelizza
Journal: Arch Mikrobiol Date: 1969

8. Characterization of the enzymatic domains in the modular polyketide synthase involved in rifamycin B biosynthesis by Amycolatopsis mediterranei.

Authors: L Tang; Y J Yoon; C Y Choi; C R Hutchinson
Journal: Gene Date: 1998-08-31 Impact factor: 3.688

9. In vitro susceptibility of Mycobacterium avium complex and Mycobacterium tuberculosis strains to a spiro-piperidyl rifamycin.

Authors: C L Woodley; J O Kilburn
Journal: Am Rev Respir Dis Date: 1982-09

10. In vitro activity of new rifamycins against rifampicin-resistant M. tuberculosis and MAIS-complex mycobacteria.

Authors: J M Dickinson; D A Mitchison
Journal: Tubercle Date: 1987-09

14 in total

Review 1. Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes.

Authors: Richard H Baltz
Journal: J Ind Microbiol Biotechnol Date: 2015-09-12 Impact factor: 3.346

2. Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy.

Authors: Biao Tang; Wei Zhao; Huajun Zheng; Ying Zhuo; Lixin Zhang; Guo-Ping Zhao
Journal: J Bacteriol Date: 2012-10 Impact factor: 3.490

3. RifZ (AMED_0655) Is a Pathway-Specific Regulator for Rifamycin Biosynthesis in Amycolatopsis mediterranei.

Authors: Chen Li; Xinqiang Liu; Chao Lei; Han Yan; Zhihui Shao; Ying Wang; Guoping Zhao; Jin Wang; Xiaoming Ding
Journal: Appl Environ Microbiol Date: 2017-03-31 Impact factor: 4.792

4. Genetics and Genomics of the Genus Amycolatopsis.

Authors: Rashmi Kumari; Priya Singh; Rup Lal
Journal: Indian J Microbiol Date: 2016-05-02 Impact factor: 2.461

5. Modification of rifamycin polyketide backbone leads to improved drug activity against rifampicin-resistant Mycobacterium tuberculosis.

Authors: Aeshna Nigam; Khaled H Almabruk; Anjali Saxena; Jongtae Yang; Udita Mukherjee; Hardeep Kaur; Puneet Kohli; Rashmi Kumari; Priya Singh; Lev N Zakharov; Yogendra Singh; Taifo Mahmud; Rup Lal
Journal: J Biol Chem Date: 2014-07-25 Impact factor: 5.157