Literature DB >> 23010843

Isotopic labeling-assisted metabolomics using LC-MS.

C Bueschl1, R Krska, B Kluger, R Schuhmacher.   

Abstract

Metabolomics has emerged as the latest of the so-called "omics" disciplines and has great potential to provide deeper understanding of fundamental biochemical processes at the biological system level. Among recent technological developments, LC-HRMS enables determination of hundreds to thousands of metabolites over a wide range of concentrations and has developed into one of the most powerful techniques in non-targeted metabolomics. The analysis of mixtures of in-vivo-stable isotopic-labeled samples or reference substances with un-labeled samples leads to specific LC-MS data patterns which can be systematically exploited in practically all data-processing steps. This includes recognition of true metabolite-derived analytical features in highly complex LC-MS data and characterization of the global biochemical composition of biological samples. In addition, stable-isotopic labeling can be used for more accurate quantification (via internal standardization) and identification of compounds in different organisms.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23010843      PMCID: PMC3536965          DOI: 10.1007/s00216-012-6375-y

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  31 in total

Review 1.  Isotope labeling experiments in metabolomics and fluxomics.

Authors:  Sebastian Klein; Elmar Heinzle
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2012-03-23

2.  Nontargeted elucidation of metabolic pathways using stable-isotope tracers and mass spectrometry.

Authors:  Karsten Hiller; Christian M Metallo; Joanne K Kelleher; Gregory Stephanopoulos
Journal:  Anal Chem       Date:  2010-08-01       Impact factor: 6.986

Review 3.  Metabolic labeling of proteins for proteomics.

Authors:  Robert J Beynon; Julie M Pratt
Journal:  Mol Cell Proteomics       Date:  2005-04-22       Impact factor: 5.911

4.  TOPP--the OpenMS proteomics pipeline.

Authors:  Oliver Kohlbacher; Knut Reinert; Clemens Gröpl; Eva Lange; Nico Pfeifer; Ole Schulz-Trieglaff; Marc Sturm
Journal:  Bioinformatics       Date:  2007-01-15       Impact factor: 6.937

5.  Development and validation of a liquid chromatography/tandem mass spectrometric method for the determination of 39 mycotoxins in wheat and maize.

Authors:  Michael Sulyok; Franz Berthiller; Rudolf Krska; Rainer Schuhmacher
Journal:  Rapid Commun Mass Spectrom       Date:  2006       Impact factor: 2.419

6.  TOPPView: an open-source viewer for mass spectrometry data.

Authors:  Marc Sturm; Oliver Kohlbacher
Journal:  J Proteome Res       Date:  2009-07       Impact factor: 4.466

7.  Metabolomic analysis and visualization engine for LC-MS data.

Authors:  Eugene Melamud; Livia Vastag; Joshua D Rabinowitz
Journal:  Anal Chem       Date:  2010-11-04       Impact factor: 6.986

8.  Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis.

Authors:  Jason W Locasale; Alexandra R Grassian; Tamar Melman; Costas A Lyssiotis; Katherine R Mattaini; Adam J Bass; Gregory Heffron; Christian M Metallo; Taru Muranen; Hadar Sharfi; Atsuo T Sasaki; Dimitrios Anastasiou; Edouard Mullarky; Natalie I Vokes; Mika Sasaki; Rameen Beroukhim; Gregory Stephanopoulos; Azra H Ligon; Matthew Meyerson; Andrea L Richardson; Lynda Chin; Gerhard Wagner; John M Asara; Joan S Brugge; Lewis C Cantley; Matthew G Vander Heiden
Journal:  Nat Genet       Date:  2011-07-31       Impact factor: 38.330

Review 9.  LC-MS-based metabolomics.

Authors:  Bin Zhou; Jun Feng Xiao; Leepika Tuli; Habtom W Ressom
Journal:  Mol Biosyst       Date:  2011-11-01

Review 10.  Systematic functional analysis of the yeast genome.

Authors:  S G Oliver; M K Winson; D B Kell; F Baganz
Journal:  Trends Biotechnol       Date:  1998-09       Impact factor: 19.536

View more
  25 in total

1.  Reference Standardization for Mass Spectrometry and High-resolution Metabolomics Applications to Exposome Research.

Authors:  Young-Mi Go; Douglas I Walker; Yongliang Liang; Karan Uppal; Quinlyn A Soltow; ViLinh Tran; Frederick Strobel; Arshed A Quyyumi; Thomas R Ziegler; Kurt D Pennell; Gary W Miller; Dean P Jones
Journal:  Toxicol Sci       Date:  2015-09-09       Impact factor: 4.849

2.  Isotope Labeling-Assisted Evaluation of Hydrophilic and Hydrophobic Liquid Chromatograph-Mass Spectrometry for Metabolomics Profiling.

Authors:  Boer Xie; Yuanyuan Wang; Drew R Jones; Kaushik Kumar Dey; Xusheng Wang; Yuxin Li; Ji-Hoon Cho; Timothy I Shaw; Haiyan Tan; Junmin Peng
Journal:  Anal Chem       Date:  2018-06-25       Impact factor: 6.986

3.  DeltaMS: a tool to track isotopologues in GC- and LC-MS data.

Authors:  Tim U H Baumeister; Nico Ueberschaar; Wolfgang Schmidt-Heck; J Frieder Mohr; Michael Deicke; Thomas Wichard; Reinhard Guthke; Georg Pohnert
Journal:  Metabolomics       Date:  2018-02-27       Impact factor: 4.290

4.  Tracing insights into human metabolism using chemical engineering approaches.

Authors:  Thekla Cordes; Christian M Metallo
Journal:  Curr Opin Chem Eng       Date:  2016-09-10       Impact factor: 5.163

5.  Parenteral and enteral nutrition in surgical critical care: Plasma metabolomics demonstrates divergent effects on nitrogen, fatty-acid, ribonucleotide, and oxidative metabolism.

Authors:  Brodie A Parent; Max Seaton; Danijel Djukovic; Haiwei Gu; Brittany Wheelock; Sandi L Navarro; Daniel Raftery; Grant E O'Keefe
Journal:  J Trauma Acute Care Surg       Date:  2017-04       Impact factor: 3.313

Review 6.  Stable isotope-labeling studies in metabolomics: new insights into structure and dynamics of metabolic networks.

Authors:  Achuthanunni Chokkathukalam; Dong-Hyun Kim; Michael P Barrett; Rainer Breitling; Darren J Creek
Journal:  Bioanalysis       Date:  2014-02       Impact factor: 2.681

7.  Development of a high-throughput method for real-time assessment of cellular metabolism in intact long skeletal muscle fibre bundles.

Authors:  Rui Li; Frederik J Steyn; Michael B Stout; Kevin Lee; Tanya R Cully; Juan C Calderón; Shyuan T Ngo
Journal:  J Physiol       Date:  2016-11-03       Impact factor: 5.182

8.  Use of Metabolomics to Trend Recovery and Therapy After Injury in Critically Ill Trauma Patients.

Authors:  Brodie A Parent; Max Seaton; Ravi F Sood; Haiwei Gu; Danijel Djukovic; Daniel Raftery; Grant E O'Keefe
Journal:  JAMA Surg       Date:  2016-07-20       Impact factor: 14.766

9.  Bridging the gap between systems biology and synthetic biology.

Authors:  Di Liu; Allison Hoynes-O'Connor; Fuzhong Zhang
Journal:  Front Microbiol       Date:  2013-07-25       Impact factor: 5.640

10.  Tracing the metabolism of HT-2 toxin and T-2 toxin in barley by isotope-assisted untargeted screening and quantitative LC-HRMS analysis.

Authors:  Jacqueline Meng-Reiterer; Elisabeth Varga; Alexis V Nathanail; Christoph Bueschl; Justyna Rechthaler; Susan P McCormick; Herbert Michlmayr; Alexandra Malachová; Philipp Fruhmann; Gerhard Adam; Franz Berthiller; Marc Lemmens; Rainer Schuhmacher
Journal:  Anal Bioanal Chem       Date:  2015-09-03       Impact factor: 4.142

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.