Literature DB >> 23009853

Rigidifying acyl carrier protein domain in iterative type I PKS CalE8 does not affect its function.

Jackwee Lim1, Huihua Sun, Jing-Song Fan, Iman Fahim Hameed, Julien Lescar, Zhao-Xun Liang, Daiwen Yang.   

Abstract

Acyl carrier protein (ACP) domains shuttle acyl intermediates among the catalytic domains of multidomain type I fatty acid synthase and polyketide synthase (PKS) systems. It is believed that the unique function of ACPs is associated with their dynamic property, but it remains to be fully elucidated what type of protein dynamics is critical for the shuttling domain. Using NMR techniques, we found that the ACP domain of iterative type I PKS CalE8 from Micromonospora echinospora is highly dynamic on the millisecond-second timescale. Introduction of an interhelical disulfide linkage in the ACP domain suppresses the dynamics on the millisecond-second timescale and reduces the mobility on the picosecond-nanosecond timescale. We demonstrate that the full-length PKS is fully functional upon rigidification of the ACP domain, suggesting that although the flexibility of the disordered terminal linkers may be important for the function of the ACP domain, the internal dynamics of the helical regions is not critical for that function.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23009853      PMCID: PMC3433619          DOI: 10.1016/j.bpj.2012.08.006

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

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2.  Sequence-dependent correction of random coil NMR chemical shifts.

Authors:  S Schwarzinger; G J Kroon; T R Foss; J Chung; P E Wright; H J Dyson
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3.  Solution structure and backbone dynamics of the holo form of the frenolicin acyl carrier protein.

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Review 4.  Current understanding of fatty acid biosynthesis and the acyl carrier protein.

Authors:  David I Chan; Hans J Vogel
Journal:  Biochem J       Date:  2010-08-15       Impact factor: 3.857

Review 5.  Biosynthesis of polyketides by trans-AT polyketide synthases.

Authors:  Jörn Piel
Journal:  Nat Prod Rep       Date:  2010-05-12       Impact factor: 13.423

6.  Site-directed mutagenesis of acyl carrier protein (ACP) reveals amino acid residues involved in ACP structure and acyl-ACP synthetase activity.

Authors:  A S Flaman; J M Chen; S C Van Iderstine; D M Byers
Journal:  J Biol Chem       Date:  2001-07-06       Impact factor: 5.157

7.  Measurement of amide hydrogen exchange rates with the use of radiation damping.

Authors:  Jing-Song Fan; Jackwee Lim; Binhan Yu; Daiwen Yang
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8.  The solution structure of acyl carrier protein from Mycobacterium tuberculosis.

Authors:  Hing C Wong; Gaohua Liu; Yong-Mei Zhang; Charles O Rock; Jie Zheng
Journal:  J Biol Chem       Date:  2002-02-01       Impact factor: 5.157

9.  Solution structure and dynamics of oxytetracycline polyketide synthase acyl carrier protein from Streptomyces rimosus.

Authors:  Stuart C Findlow; Claire Winsor; Thomas J Simpson; John Crosby; Matthew P Crump
Journal:  Biochemistry       Date:  2003-07-22       Impact factor: 3.162

10.  Solution structures of the acyl carrier protein domain from the highly reducing type I iterative polyketide synthase CalE8.

Authors:  Jackwee Lim; Rong Kong; Elavazhagan Murugan; Chun Loong Ho; Zhao-Xun Liang; Daiwen Yang
Journal:  PLoS One       Date:  2011-06-02       Impact factor: 3.240

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  4 in total

1.  13Cα CEST experiment on uniformly 13C-labeled proteins.

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Journal:  J Biomol NMR       Date:  2014-12-04       Impact factor: 2.835

2.  Biochemical determination of enzyme-bound metabolites: preferential accumulation of a programmed octaketide on the enediyne polyketide synthase CalE8.

Authors:  Katherine Belecki; Craig A Townsend
Journal:  J Am Chem Soc       Date:  2013-09-17       Impact factor: 15.419

3.  Solution Structure of a Nonribosomal Peptide Synthetase Carrier Protein Loaded with Its Substrate Reveals Transient, Well-Defined Contacts.

Authors:  Andrew C Goodrich; Bradley J Harden; Dominique P Frueh
Journal:  J Am Chem Soc       Date:  2015-09-15       Impact factor: 15.419

4.  Equilibrium folding dynamics of meACP in water, heavy water, and low concentration of urea.

Authors:  Yang Zhou; Daiwen Yang
Journal:  Sci Rep       Date:  2017-11-23       Impact factor: 4.379

  4 in total

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