Literature DB >> 23006109

Pathway-based mean-field model for Escherichia coli chemotaxis.

Guangwei Si1, Tailin Wu, Qi Ouyang, Yuhai Tu.   

Abstract

We develop a mean-field theory for Escherichia coli chemotaxis based on the coupled spatiotemporal dynamics of the cell population and the mean receptor methylation level field. This multiscale model connects the cells' population level motility behavior with the molecular level pathway dynamics. It reveals a simple scaling dependence of the chemotaxis velocity on the adaptation rate in exponential gradients. It explains the molecular origin of a maximum chemotaxis velocity. Simulations of our model in various spatiotemporal stimuli profiles show quantitative agreements with experiments. Moreover, it predicts a surprising reversal of chemotaxis group velocity in traveling wave environments. Our approach may be used to bridge molecular level pathway dynamics with cellular behavior in other biological systems.

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Year:  2012        PMID: 23006109      PMCID: PMC3458579          DOI: 10.1103/PhysRevLett.109.048101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  19 in total

1.  An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells.

Authors:  P Cluzel; M Surette; S Leibler
Journal:  Science       Date:  2000-03-03       Impact factor: 47.728

2.  Receptor sensitivity in bacterial chemotaxis.

Authors:  Victor Sourjik; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

Review 3.  Overview of mathematical approaches used to model bacterial chemotaxis II: bacterial populations.

Authors:  M J Tindall; P K Maini; S L Porter; J P Armitage
Journal:  Bull Math Biol       Date:  2008-07-19       Impact factor: 1.758

4.  Modeling the chemotactic response of Escherichia coli to time-varying stimuli.

Authors:  Yuhai Tu; Thomas S Shimizu; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-23       Impact factor: 11.205

5.  Logarithmic sensing in Escherichia coli bacterial chemotaxis.

Authors:  Yevgeniy V Kalinin; Lili Jiang; Yuhai Tu; Mingming Wu
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

6.  Quorum sensing controls biofilm formation in Vibrio cholerae.

Authors:  Brian K Hammer; Bonnie L Bassler
Journal:  Mol Microbiol       Date:  2003-10       Impact factor: 3.501

7.  Chemotaxis in bacteria.

Authors:  J Adler
Journal:  Science       Date:  1966-08-12       Impact factor: 47.728

8.  Quantitative modeling of sensitivity in bacterial chemotaxis: the role of coupling among different chemoreceptor species.

Authors:  Bernardo A Mello; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-25       Impact factor: 12.779

9.  Chemotaxis in Escherichia coli: a molecular model for robust precise adaptation.

Authors:  Clinton H Hansen; Robert G Endres; Ned S Wingreen
Journal:  PLoS Comput Biol       Date:  2007-11-20       Impact factor: 4.475

10.  Dependence of bacterial chemotaxis on gradient shape and adaptation rate.

Authors:  Nikita Vladimirov; Linda Løvdok; Dirk Lebiedz; Victor Sourjik
Journal:  PLoS Comput Biol       Date:  2008-12-19       Impact factor: 4.475

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  18 in total

1.  Escape band in Escherichia coli chemotaxis in opposing attractant and nutrient gradients.

Authors:  Xuanqi Zhang; Guangwei Si; Yiming Dong; Kaiyue Chen; Qi Ouyang; Chunxiong Luo; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-23       Impact factor: 11.205

2.  Fast, high-throughput measurement of collective behaviour in a bacterial population.

Authors:  R Colin; R Zhang; L G Wilson
Journal:  J R Soc Interface       Date:  2014-09-06       Impact factor: 4.118

3.  Derivation of the bacterial run-and-tumble kinetic equation from a model with biochemical pathway.

Authors:  Benoît Perthame; Min Tang; Nicolas Vauchelet
Journal:  J Math Biol       Date:  2016-03-18       Impact factor: 2.259

4.  Adaptation of Living Systems.

Authors:  Yuhai Tu; Wouter-Jan Rappel
Journal:  Annu Rev Condens Matter Phys       Date:  2017-12-08       Impact factor: 16.109

5.  Barrier Crossing in Escherichia coli Chemotaxis.

Authors:  Zhaojun Li; Qiuxian Cai; Xuanqi Zhang; Guangwei Si; Qi Ouyang; Chunxiong Luo; Yuhai Tu
Journal:  Phys Rev Lett       Date:  2017-02-28       Impact factor: 9.161

Review 6.  Behavioral Variability and Phenotypic Diversity in Bacterial Chemotaxis.

Authors:  Adam James Waite; Nicholas W Frankel; Thierry Emonet
Journal:  Annu Rev Biophys       Date:  2018-04-04       Impact factor: 12.981

7.  Excitation and adaptation in bacteria-a model signal transduction system that controls taxis and spatial pattern formation.

Authors:  Hans G Othmer; Xiangrong Xin; Chuan Xue
Journal:  Int J Mol Sci       Date:  2013-04-26       Impact factor: 5.923

8.  Drift and Behavior of E. coli Cells.

Authors:  Gabriele Micali; Rémy Colin; Victor Sourjik; Robert G Endres
Journal:  Biophys J       Date:  2017-10-27       Impact factor: 4.033

9.  Behaviors and strategies of bacterial navigation in chemical and nonchemical gradients.

Authors:  Bo Hu; Yuhai Tu
Journal:  PLoS Comput Biol       Date:  2014-06-19       Impact factor: 4.475

10.  Limits of feedback control in bacterial chemotaxis.

Authors:  Yann S Dufour; Xiongfei Fu; Luis Hernandez-Nunez; Thierry Emonet
Journal:  PLoS Comput Biol       Date:  2014-06-26       Impact factor: 4.475

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