Literature DB >> 23001004

A biphasic pulling force acts on transmembrane helices during translocon-mediated membrane integration.

Nurzian Ismail1, Rickard Hedman, Nina Schiller, Gunnar von Heijne.   

Abstract

Membrane proteins destined for insertion into the inner membrane of bacteria or the endoplasmic reticulum membrane in eukaryotic cells are synthesized by ribosomes bound to the bacterial SecYEG or the homologous eukaryotic Sec61 translocon. During co-translational membrane integration, transmembrane α-helical segments in the nascent chain exit the translocon through a lateral gate that opens toward the surrounding membrane, but the mechanism of lateral exit is not well understood. In particular, little is known about how a transmembrane helix behaves when entering and exiting the translocon. Using translation-arrest peptides from bacterial SecM proteins and from the mammalian Xbp1 protein as force sensors, we show that substantial force is exerted on a transmembrane helix at two distinct points during its transit through the translocon channel, providing direct insight into the dynamics of membrane integration.

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Year:  2012        PMID: 23001004      PMCID: PMC3553220          DOI: 10.1038/nsmb.2376

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  31 in total

1.  Secretion monitor, SecM, undergoes self-translation arrest in the cytosol.

Authors:  H Nakatogawa; K Ito
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

2.  The translational regulatory function of SecM requires the precise timing of membrane targeting.

Authors:  Mee-Ngan Yap; Harris D Bernstein
Journal:  Mol Microbiol       Date:  2011-06-03       Impact factor: 3.501

3.  X-ray structure of a protein-conducting channel.

Authors:  Bert Van den Berg; William M Clemons; Ian Collinson; Yorgo Modis; Enno Hartmann; Stephen C Harrison; Tom A Rapoport
Journal:  Nature       Date:  2003-12-03       Impact factor: 49.962

4.  Translocon "pulling" of nascent SecM controls the duration of its translational pause and secretion-responsive secA regulation.

Authors:  Martha E Butkus; Lucia B Prundeanu; Donald B Oliver
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

5.  Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes.

Authors:  Pascal F Egea; Robert M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-20       Impact factor: 11.205

6.  Prediction of protein conformation.

Authors:  P Y Chou; G D Fasman
Journal:  Biochemistry       Date:  1974-01-15       Impact factor: 3.162

7.  The role of the polar, carboxyl-terminal domain of Escherichia coli leader peptidase in its translocation across the plasma membrane.

Authors:  R E Dalbey; W Wickner
Journal:  J Biol Chem       Date:  1986-10-15       Impact factor: 5.157

8.  The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel.

Authors:  Mee-Ngan Yap; Harris D Bernstein
Journal:  Mol Cell       Date:  2009-04-24       Impact factor: 17.970

Review 9.  Arginine in membranes: the connection between molecular dynamics simulations and translocon-mediated insertion experiments.

Authors:  Eric V Schow; J Alfredo Freites; Philip C. Myint; Andreas Bernsel; Gunnar von Heijne; Stephen H White; Douglas J Tobias
Journal:  J Membr Biol       Date:  2010-12-03       Impact factor: 1.843

10.  SecM-stalled ribosomes adopt an altered geometry at the peptidyl transferase center.

Authors:  Shashi Bhushan; Thomas Hoffmann; Birgit Seidelt; Jens Frauenfeld; Thorsten Mielke; Otto Berninghausen; Daniel N Wilson; Roland Beckmann
Journal:  PLoS Biol       Date:  2011-01-18       Impact factor: 8.029

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  71 in total

1.  Mechanochemistry in Translation.

Authors:  Sarah E Leininger; Karthik Narayan; Carol Deutsch; Edward P O'Brien
Journal:  Biochemistry       Date:  2019-06-11       Impact factor: 3.162

2.  Differences in the path to exit the ribosome across the three domains of life.

Authors:  Khanh Dao Duc; Sanjit S Batra; Nicholas Bhattacharya; Jamie H D Cate; Yun S Song
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

3.  Simulating the pulling of stalled elongated peptide from the ribosome by the translocon.

Authors:  Anna Rychkova; Shayantani Mukherjee; Ram Prasad Bora; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-31       Impact factor: 11.205

4.  Cotranslational folding of membrane proteins probed by arrest-peptide-mediated force measurements.

Authors:  Florian Cymer; Gunnar von Heijne
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-19       Impact factor: 11.205

5.  Ribosome. Mechanical force releases nascent chain-mediated ribosome arrest in vitro and in vivo.

Authors:  Daniel H Goldman; Christian M Kaiser; Anthony Milin; Maurizio Righini; Ignacio Tinoco; Carlos Bustamante
Journal:  Science       Date:  2015-04-23       Impact factor: 47.728

6.  Multiscale modeling of biological functions: from enzymes to molecular machines (Nobel Lecture).

Authors:  Arieh Warshel
Journal:  Angew Chem Int Ed Engl       Date:  2014-07-24       Impact factor: 15.336

7.  MifM monitors total YidC activities of Bacillus subtilis, including that of YidC2, the target of regulation.

Authors:  Shinobu Chiba; Koreaki Ito
Journal:  J Bacteriol       Date:  2014-10-13       Impact factor: 3.490

Review 8.  Protein export through the bacterial Sec pathway.

Authors:  Alexandra Tsirigotaki; Jozefien De Geyter; Nikolina Šoštaric; Anastassios Economou; Spyridoula Karamanou
Journal:  Nat Rev Microbiol       Date:  2016-11-28       Impact factor: 60.633

9.  Forces on Nascent Polypeptides during Membrane Insertion and Translocation via the Sec Translocon.

Authors:  Michiel J M Niesen; Annika Müller-Lucks; Rickard Hedman; Gunnar von Heijne; Thomas F Miller
Journal:  Biophys J       Date:  2018-10-10       Impact factor: 4.033

10.  A small single-domain protein folds through the same pathway on and off the ribosome.

Authors:  Emily J Guinn; Pengfei Tian; Mia Shin; Robert B Best; Susan Marqusee
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-08       Impact factor: 11.205

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