Literature DB >> 25908824

Ribosome. Mechanical force releases nascent chain-mediated ribosome arrest in vitro and in vivo.

Daniel H Goldman1, Christian M Kaiser2, Anthony Milin3, Maurizio Righini4, Ignacio Tinoco1, Carlos Bustamante5.   

Abstract

Protein synthesis rates can affect gene expression and the folding and activity of the translation product. Interactions between the nascent polypeptide and the ribosome exit tunnel represent one mode of regulating synthesis rates. The SecM protein arrests its own translation, and release of arrest at the translocon has been proposed to occur by mechanical force. Using optical tweezers, we demonstrate that arrest of SecM-stalled ribosomes can indeed be rescued by force alone and that the force needed to release stalling can be generated in vivo by a nascent chain folding near the ribosome tunnel exit. We formulate a kinetic model describing how a protein can regulate its own synthesis by the force generated during folding, tuning ribosome activity to structure acquisition by a nascent polypeptide.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 25908824      PMCID: PMC4618485          DOI: 10.1126/science.1261909

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  26 in total

1.  The ribosomal exit tunnel functions as a discriminating gate.

Authors:  Hitoshi Nakatogawa; Koreaki Ito
Journal:  Cell       Date:  2002-03-08       Impact factor: 41.582

2.  Design of a novel globular protein fold with atomic-level accuracy.

Authors:  Brian Kuhlman; Gautam Dantas; Gregory C Ireton; Gabriele Varani; Barry L Stoddard; David Baker
Journal:  Science       Date:  2003-11-21       Impact factor: 47.728

3.  Translocon "pulling" of nascent SecM controls the duration of its translational pause and secretion-responsive secA regulation.

Authors:  Martha E Butkus; Lucia B Prundeanu; Donald B Oliver
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

4.  PUROMYCIN INHIBITION OF PROTEIN SYNTHESIS: INCORPORATION OF PUROMYCIN INTO PEPTIDE CHAINS.

Authors:  D NATHANS
Journal:  Proc Natl Acad Sci U S A       Date:  1964-04       Impact factor: 11.205

5.  The geometry of the ribosomal polypeptide exit tunnel.

Authors:  N R Voss; M Gerstein; T A Steitz; P B Moore
Journal:  J Mol Biol       Date:  2006-05-30       Impact factor: 5.469

6.  Hsp70 chaperones accelerate protein translocation and the unfolding of stable protein aggregates by entropic pulling.

Authors:  Paolo De Los Rios; Anat Ben-Zvi; Olga Slutsky; Abdussalam Azem; Pierre Goloubinoff
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

7.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

Review 8.  Timing is everything: unifying codon translation rates and nascent proteome behavior.

Authors:  Daniel A Nissley; Edward P O'Brien
Journal:  J Am Chem Soc       Date:  2014-12-19       Impact factor: 15.419

Review 9.  Models for the specific adhesion of cells to cells.

Authors:  G I Bell
Journal:  Science       Date:  1978-05-12       Impact factor: 47.728

10.  Genetically encoded but nonpolypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall.

Authors:  Hiroki Muto; Hitoshi Nakatogawa; Koreaki Ito
Journal:  Mol Cell       Date:  2006-05-19       Impact factor: 17.970

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  83 in total

1.  Mechanochemistry in Translation.

Authors:  Sarah E Leininger; Karthik Narayan; Carol Deutsch; Edward P O'Brien
Journal:  Biochemistry       Date:  2019-06-11       Impact factor: 3.162

2.  Differences in the path to exit the ribosome across the three domains of life.

Authors:  Khanh Dao Duc; Sanjit S Batra; Nicholas Bhattacharya; Jamie H D Cate; Yun S Song
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

3.  Transition from stochastic events to deterministic ensemble average in electron transfer reactions revealed by single-molecule conductance measurement.

Authors:  Yueqi Li; Hui Wang; Zixiao Wang; Yanjun Qiao; Jens Ulstrup; Hong-Yuan Chen; Gang Zhou; Nongjian Tao
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-08       Impact factor: 11.205

Review 4.  The stop-and-go traffic regulating protein biogenesis: How translation kinetics controls proteostasis.

Authors:  Kevin C Stein; Judith Frydman
Journal:  J Biol Chem       Date:  2018-11-30       Impact factor: 5.157

5.  Translation and folding of single proteins in real time.

Authors:  Florian Wruck; Alexandros Katranidis; Knud H Nierhaus; Georg Büldt; Martin Hegner
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

Review 6.  Ribosome pausing, arrest and rescue in bacteria and eukaryotes.

Authors:  Allen R Buskirk; Rachel Green
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

7.  The ribosome destabilizes native and non-native structures in a nascent multidomain protein.

Authors:  Kaixian Liu; Joseph E Rehfus; Elliot Mattson; Christian M Kaiser
Journal:  Protein Sci       Date:  2017-05-19       Impact factor: 6.725

8.  Pre-T Cell Receptors (Pre-TCRs) Leverage Vβ Complementarity Determining Regions (CDRs) and Hydrophobic Patch in Mechanosensing Thymic Self-ligands.

Authors:  Dibyendu Kumar Das; Robert J Mallis; Jonathan S Duke-Cohan; Rebecca E Hussey; Paul W Tetteh; Mark Hilton; Gerhard Wagner; Matthew J Lang; Ellis L Reinherz
Journal:  J Biol Chem       Date:  2016-10-05       Impact factor: 5.157

9.  Forces on Nascent Polypeptides during Membrane Insertion and Translocation via the Sec Translocon.

Authors:  Michiel J M Niesen; Annika Müller-Lucks; Rickard Hedman; Gunnar von Heijne; Thomas F Miller
Journal:  Biophys J       Date:  2018-10-10       Impact factor: 4.033

Review 10.  A Review of Single-Cell Adhesion Force Kinetics and Applications.

Authors:  Ashwini Shinde; Kavitha Illath; Pallavi Gupta; Pallavi Shinde; Ki-Taek Lim; Moeto Nagai; Tuhin Subhra Santra
Journal:  Cells       Date:  2021-03-05       Impact factor: 6.600

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