Literature DB >> 22983844

Online tools for bioinformatics analyses in nutrition sciences.

Sridhar A Malkaram1, Yousef I Hassan, Janos Zempleni.   

Abstract

Recent advances in "omics" research have resulted in the creation of large datasets that were generated by consortiums and centers, small datasets that were generated by individual investigators, and bioinformatics tools for mining these datasets. It is important for nutrition laboratories to take full advantage of the analysis tools to interrogate datasets for information relevant to genomics, epigenomics, transcriptomics, proteomics, and metabolomics. This review provides guidance regarding bioinformatics resources that are currently available in the public domain, with the intent to provide a starting point for investigators who want to take advantage of the opportunities provided by the bioinformatics field.

Mesh:

Year:  2012        PMID: 22983844      PMCID: PMC3648747          DOI: 10.3945/an.112.002477

Source DB:  PubMed          Journal:  Adv Nutr        ISSN: 2161-8313            Impact factor:   8.701


  126 in total

1.  dbSNP: the NCBI database of genetic variation.

Authors:  S T Sherry; M H Ward; M Kholodov; J Baker; L Phan; E M Smigielski; K Sirotkin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 2.  From genomics to proteomics: techniques and applications in cancer research.

Authors:  D B Martin; P S Nelson
Journal:  Trends Cell Biol       Date:  2001-11       Impact factor: 20.808

3.  The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data.

Authors:  Viviane Praz; Rouaïda Périer; Claude Bonnard; Philipp Bucher
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

4.  Bioinformatics in proteomics.

Authors:  M Vihinen
Journal:  Biomol Eng       Date:  2001-11

Review 5.  Protein microarrays and proteomics.

Authors:  Gavin MacBeath
Journal:  Nat Genet       Date:  2002-12       Impact factor: 38.330

Review 6.  NMR-based metabolomics.

Authors:  Nicholas V Reo
Journal:  Drug Chem Toxicol       Date:  2002-11       Impact factor: 3.356

7.  MTHFR 677C-->T polymorphism and risk of coronary heart disease: a meta-analysis.

Authors:  Mariska Klerk; Petra Verhoef; Robert Clarke; Henk J Blom; Frans J Kok; Evert G Schouten
Journal:  JAMA       Date:  2002 Oct 23-30       Impact factor: 56.272

8.  SNPper: retrieval and analysis of human SNPs.

Authors:  A Riva; I S Kohane
Journal:  Bioinformatics       Date:  2002-12       Impact factor: 6.937

9.  A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms.

Authors:  R Sachidanandam; D Weissman; S C Schmidt; J M Kakol; L D Stein; G Marth; S Sherry; J C Mullikin; B J Mortimore; D L Willey; S E Hunt; C G Cole; P C Coggill; C M Rice; Z Ning; J Rogers; D R Bentley; P Y Kwok; E R Mardis; R T Yeh; B Schultz; L Cook; R Davenport; M Dante; L Fulton; L Hillier; R H Waterston; J D McPherson; B Gilman; S Schaffner; W J Van Etten; D Reich; J Higgins; M J Daly; B Blumenstiel; J Baldwin; N Stange-Thomann; M C Zody; L Linton; E S Lander; D Altshuler
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

10.  An MTHFR variant, homocysteine, and cardiovascular comorbidity in renal disease.

Authors:  E M Wrone; J L Zehnder; J M Hornberger; L M McCann; N S Coplon; S P Fortmann
Journal:  Kidney Int       Date:  2001-09       Impact factor: 10.612

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  5 in total

1.  Nutri-informatics: a new kid on the block?

Authors:  Frank Döring; Gerald Rimbach
Journal:  Genes Nutr       Date:  2014-03-12       Impact factor: 5.523

2.  Targeted plasma metabolome response to variations in dietary glycemic load in a randomized, controlled, crossover feeding trial in healthy adults.

Authors:  Sally Barton; Sandi L Navarro; Matthew F Buas; Yvonne Schwarz; Haiwei Gu; Danijel Djukovic; Daniel Raftery; Mario Kratz; Marian L Neuhouser; Johanna W Lampe
Journal:  Food Funct       Date:  2015-09       Impact factor: 5.396

3.  The Need for Precision Medicine to be Applied to Diabetes.

Authors:  David C Klonoff; Jose C Florez; Michael German; Alexander Fleming
Journal:  J Diabetes Sci Technol       Date:  2020-01-06

Review 4.  Nutrigenomics of body weight regulation: a rationale for careful dissection of individual contributors.

Authors:  Jaap Keijer; Femke P M Hoevenaars; Arie Nieuwenhuizen; Evert M van Schothorst
Journal:  Nutrients       Date:  2014-10-21       Impact factor: 5.717

Review 5.  Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules-Search Options and Applications in Food Science.

Authors:  Piotr Minkiewicz; Małgorzata Darewicz; Anna Iwaniak; Justyna Bucholska; Piotr Starowicz; Emilia Czyrko
Journal:  Int J Mol Sci       Date:  2016-12-06       Impact factor: 5.923

  5 in total

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