Literature DB >> 22981542

Exploratory data analysis for the interpretation of low template DNA mixtures.

H Haned1, K Slooten, P Gill.   

Abstract

The interpretation of DNA mixtures has proven to be a complex problem in forensic genetics. In particular, low template DNA samples, where alleles can be missing (allele drop-out), or where alleles unrelated to the crime-sample are amplified (allele drop-in), cannot be analysed with classical approaches such as random man not excluded or random match probability. Drop-out, drop-in, stutters and other PCR-related stochastic effects, create uncertainty about the composition of the crime-sample, making it difficult to attach a weight of evidence when (a) reference sample(s) is (are) compared to the crime-sample. In this paper, we use a probabilistic model to calculate likelihood ratios when there is uncertainty about the composition of the crime-sample. This model is essentially exploratory in the sense that it allows the exploration of LRs when two key-parameters, drop-out and drop-in are varied within their plausible ranges of variation. We build on the work of Curran et al., and improve their probabilistic model to allow more flexibility in the way the model parameters are applied. Two new main modifications are brought to their model: (i) different drop-out probabilities can be applied to different contributors, and (ii) different parameters can be used under the prosecution and the defence hypotheses. We illustrate how the LRs can be explored when the drop-out and drop-in parameters are varied, and suggest the use of Monte Carlo simulations to derive plausible ranges for the probability of drop-out. Although the model is suited for both high and low template samples, we illustrate the advantages of the exploratory approach through two DNA mixtures (involving two and at least three individuals) with low template components.
Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

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Year:  2012        PMID: 22981542     DOI: 10.1016/j.fsigen.2012.08.008

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  12 in total

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3.  Pedigree-based relationship inference from complex DNA mixtures.

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Journal:  Int J Legal Med       Date:  2018-05-25       Impact factor: 2.686

5.  Four model variants within a continuous forensic DNA mixture interpretation framework: Effects on evidential inference and reporting.

Authors:  Harish Swaminathan; Muhammad O Qureshi; Catherine M Grgicak; Ken Duffy; Desmond S Lun
Journal:  PLoS One       Date:  2018-11-20       Impact factor: 3.240

6.  Nothing but hot air?-On the molecular ballistic analysis of backspatter generated by and the hazard potential of blank guns.

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Journal:  Int J Legal Med       Date:  2021-03-08       Impact factor: 2.686

7.  Development and validation of open-source software for DNA mixture interpretation based on a quantitative continuous model.

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8.  Characterization of degradation and heterozygote balance by simulation of the forensic DNA analysis process.

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Journal:  Int J Legal Med       Date:  2016-11-03       Impact factor: 2.686

9.  Lab Retriever: a software tool for calculating likelihood ratios incorporating a probability of drop-out for forensic DNA profiles.

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Journal:  BMC Bioinformatics       Date:  2015-09-18       Impact factor: 3.169

10.  Interpreting Mixture Profiles: Comparison between Precision ID GlobalFiler™ NGS STR Panel v2 and Traditional Methods.

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