Literature DB >> 22978721

Semiquantification of ATP in live cells using nonspecific desorption of DNA from graphene oxide as the internal reference.

Xiaohong Tan1, Tao Chen, Xiangling Xiong, Ye Mao, Guizhi Zhu, Emir Yasun, Chunmei Li, Zhi Zhu, Weihong Tan.   

Abstract

In this aritcle, we have developed an interesting imaging method for intracellular ATP molecules with semiquantitation. While there has been a lot of work in understanding intracellular events, very few can come close to quantitation or semiquantitation in living cells. In this work, we made an effective use of nanomaterials, graphene oxides, both as a quencher and a carrier for intracellular delivery. In addition, this graphene oxide also serves as the carrier for reference probes for fluorescent imaging. An ATP aptamer molecular beacon (AAMB) is adsorbed on graphene oxide (GO) to form a double quenching platform. The AAMB/GO spontaneously enters cells, and then AAMB is released and opened by intracellular ATP. The resulting fluorescence recovery is used to perform ATP live-cell imaging with greatly improved background and signaling. Moreover, a control ssDNA, which is released nonspecifically from GO by nontarget cellular proteins, can serve as an internal reference for ATP semiquantification inside living cells using the intensity ratio of the AAMB and control. This approach can serve as a way for intracellular delivery and quantitative analysis.

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Year:  2012        PMID: 22978721      PMCID: PMC3544202          DOI: 10.1021/ac301657f

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  18 in total

1.  An efficient method for quantitative determination of cellular ATP synthetic activity.

Authors:  Kiyotaka Y Hara; Hideo Mori
Journal:  J Biomol Screen       Date:  2006-02-20

2.  Aptamer switch probe based on intramolecular displacement.

Authors:  Zhiwen Tang; Prabodhika Mallikaratchy; Ronghua Yang; Youngmi Kim; Zhi Zhu; Hui Wang; Weihong Tan
Journal:  J Am Chem Soc       Date:  2008-08-05       Impact factor: 15.419

3.  A rapid HPLC method for determination of adenylate energy charge.

Authors:  A Viarengo; A Secondini; P Scoppa; M Orunesu
Journal:  Experientia       Date:  1986-12-01

4.  Cells die with increased cytosolic ATP during apoptosis: a bioluminescence study with intracellular luciferase.

Authors:  M V Zamaraeva; R Z Sabirov; E Maeno; Y Ando-Akatsuka; S V Bessonova; Y Okada
Journal:  Cell Death Differ       Date:  2005-11       Impact factor: 15.828

5.  Glucose-stimulated oscillations in free cytosolic ATP concentration imaged in single islet beta-cells: evidence for a Ca2+-dependent mechanism.

Authors:  Edward K Ainscow; Guy A Rutter
Journal:  Diabetes       Date:  2002-02       Impact factor: 9.461

6.  Insulin-binding aptamer-conjugated graphene oxide for insulin detection.

Authors:  Ying Pu; Zhi Zhu; Da Han; Huixia Liu; Jun Liu; Jie Liao; Kejing Zhang; Weihong Tan
Journal:  Analyst       Date:  2011-08-26       Impact factor: 4.616

7.  Sustained oscillations in free-energy state and hexose phosphates in yeast.

Authors:  P Richard; B Teusink; M B Hemker; K Van Dam; H V Westerhoff
Journal:  Yeast       Date:  1996-06-30       Impact factor: 3.239

8.  A graphene platform for sensing biomolecules.

Authors:  Chun-Hua Lu; Huang-Hao Yang; Chun-Ling Zhu; Xi Chen; Guo-Nan Chen
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

9.  Electrochemical sensing and biosensing platform based on chemically reduced graphene oxide.

Authors:  Ming Zhou; Yueming Zhai; Shaojun Dong
Journal:  Anal Chem       Date:  2009-07-15       Impact factor: 6.986

10.  A genetically encoded fluorescent reporter of ATP:ADP ratio.

Authors:  Jim Berg; Yin Pun Hung; Gary Yellen
Journal:  Nat Methods       Date:  2009-01-04       Impact factor: 28.547

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  22 in total

Review 1.  Graphene/aptamer probes for small molecule detection: from in vitro test to in situ imaging.

Authors:  Yi Dong; Ting Zhang; Xiaoya Lin; Jiangtao Feng; Fang Luo; Hong Gao; Yangping Wu; Ruijie Deng; Qiang He
Journal:  Mikrochim Acta       Date:  2020-02-19       Impact factor: 5.833

2.  New insights into a classic aptamer: binding sites, cooperativity and more sensitive adenosine detection.

Authors:  Zijie Zhang; Olatunji Oni; Juewen Liu
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

3.  Engineering of switchable aptamer micelle flares for molecular imaging in living cells.

Authors:  Cuichen Wu; Tao Chen; Da Han; Mingxu You; Lu Peng; Sena Cansiz; Guizhi Zhu; Chunmei Li; Xiangling Xiong; Elizabeth Jimenez; Chaoyong James Yang; Weihong Tan
Journal:  ACS Nano       Date:  2013-06-14       Impact factor: 15.881

Review 4.  Nucleic-Acid Structures as Intracellular Probes for Live Cells.

Authors:  Devleena Samanta; Sasha B Ebrahimi; Chad A Mirkin
Journal:  Adv Mater       Date:  2019-07-04       Impact factor: 30.849

Review 5.  Molecular Engineering of Functional Nucleic Acid Nanomaterials toward In Vivo Applications.

Authors:  JingJing Zhang; Tian Lan; Yi Lu
Journal:  Adv Healthc Mater       Date:  2019-02-06       Impact factor: 9.933

6.  Simultaneous probing of dual intracellular metabolites (ATP and paramylon) in live microalgae using graphene oxide/aptamer nanocomplex.

Authors:  Jee Young Kim; Cho Rok Jin; Jaewon Park; Dae Geun Kim; Hyun Soo Kim; Yoon-E Choi
Journal:  Mikrochim Acta       Date:  2022-02-07       Impact factor: 5.833

7.  Aptamer-conjugated multifunctional nanoflowers as a platform for targeting, capture, and detection in laser desorption ionization mass spectrometry.

Authors:  Ismail Ocsoy; Basri Gulbakan; Mohammed Ibrahim Shukoor; Xiangling Xiong; Tao Chen; David H Powell; Weihong Tan
Journal:  ACS Nano       Date:  2012-12-13       Impact factor: 15.881

8.  A targeted, self-delivered, and photocontrolled molecular beacon for mRNA detection in living cells.

Authors:  Liping Qiu; Cuichen Wu; Mingxu You; Da Han; Tao Chen; Guizhi Zhu; Jianhui Jiang; Ruqin Yu; Weihong Tan
Journal:  J Am Chem Soc       Date:  2013-08-21       Impact factor: 15.419

Review 9.  Aptamers Selected by Cell-SELEX for Molecular Imaging.

Authors:  Cheng Jin; Jing Zheng; Chunmei Li; Liping Qiu; Xiaobing Zhang; Weihong Tan
Journal:  J Mol Evol       Date:  2015-11-19       Impact factor: 2.395

10.  Constraining TAT Peptide by γPNA Hairpin for Enhanced Cellular Delivery of Biomolecules.

Authors:  Siddhartha Thennakoon; Rick Postema; Xiaohong Tan
Journal:  Methods Mol Biol       Date:  2021
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