Literature DB >> 22969688

4-Carbamoylpyridin-1-ium 2,2,2-tri-chloro-acetate-isonicotinamide (1/1).

Franc Perdih.   

Abstract

In the crystal structure of the title 1:1 co-crystal, C(6)H(7)N(2)O(+)·C(2)Cl(3)O(2) (-)·C(6)H(6)N(2)O, the amide groups of the 4-carbamoylpyridin-1-ium ion and the isonicotinamide mol-ecule are twisted out of the plane of the aromatic ring with C-C-C-N torsion angles of 21.5 (4) and -33.5 (4)°, respectively. The 4-carbamoylpyridin-1-ium and isonicotinamide amide groups form R(2) (2)(8) hydrogen-bonded dimers via N-H⋯O=C inter-actions. The two remaining amide H atoms (i) link dimers via the cation to an isonicotinamide and (ii) from the isonicotinamide to a trichloro-acetate anion. The pyridinium H atom also forms an N-H⋯O hydrogen bond with the trichloro-acetate anion. Due to the extended hydrogen bonding, including C-H⋯O and C-H⋯Cl interactions, all components in the structure aggregate into a three-dimensional supra-molecular framework.

Entities:  

Year:  2012        PMID: 22969688      PMCID: PMC3435842          DOI: 10.1107/S1600536812037002

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of co-crystals, see: Karki et al. (2009 ▶); Friščić & Jones (2010 ▶). For related structures, see: Madeley et al. (2011 ▶).

Experimental

Crystal data

C6H7N2O+·C2Cl3O2 −·C6H6N2O M = 407.63 Orthorhombic, a = 13.7910 (3) Å b = 22.6680 (5) Å c = 5.6340 (1) Å V = 1761.27 (6) Å3 Z = 4 Mo Kα radiation μ = 0.55 mm−1 T = 293 K 0.4 × 0.1 × 0.1 mm

Data collection

Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.811, T max = 0.947 16297 measured reflections 4017 independent reflections 3575 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.04 wR(F 2) = 0.091 S = 1.04 4017 reflections 241 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.57 e Å−3 Absolute structure: Flack (1983) ▶, 1791 Friedel pairs Flack parameter: 0.01 (6) Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812037002/gg2095sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037002/gg2095Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812037002/gg2095Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N2O+·C2Cl3O2·C6H6N2OF(000) = 832
Mr = 407.63Dx = 1.537 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 7898 reflections
a = 13.7910 (3) Åθ = 3.1–30.4°
b = 22.6680 (5) ŵ = 0.55 mm1
c = 5.6340 (1) ÅT = 293 K
V = 1761.27 (6) Å3Prism, colourless
Z = 40.4 × 0.1 × 0.1 mm
Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer4017 independent reflections
Radiation source: SuperNova (Mo) X-ray Source3575 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.031
Detector resolution: 10.4933 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −17→17
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −29→29
Tmin = 0.811, Tmax = 0.947l = −7→7
16297 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.04H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.0359P)2 + 0.8943P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
4017 reflectionsΔρmax = 0.41 e Å3
241 parametersΔρmin = −0.57 e Å3
1 restraintAbsolute structure: Flack (1983), 1791 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (6)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.49348 (5)0.58322 (3)0.45563 (14)0.04547 (17)
Cl20.44990 (9)0.67585 (4)0.11741 (18)0.0850 (4)
Cl30.32105 (7)0.65069 (5)0.50880 (15)0.0770 (3)
N1−0.29717 (16)0.50785 (9)1.1681 (4)0.0377 (5)
H15−0.330 (2)0.4892 (15)1.285 (6)0.057*
N2−0.16743 (16)0.62843 (10)0.4929 (5)0.0396 (5)
H16A−0.217 (2)0.6478 (14)0.551 (7)0.059*
H16B−0.135 (3)0.6394 (15)0.362 (6)0.059*
N30.19060 (17)0.78523 (10)−0.3220 (5)0.0425 (5)
N40.06680 (19)0.61873 (11)0.1998 (5)0.0495 (7)
H17A0.030 (3)0.5952 (17)0.294 (8)0.074*
H17B0.131 (3)0.6133 (15)0.197 (7)0.074*
O10.25905 (13)0.57929 (9)0.1146 (4)0.0524 (5)
O20.40234 (13)0.54301 (8)0.0115 (4)0.0426 (4)
O3−0.06660 (12)0.66646 (9)0.0707 (4)0.0473 (5)
O4−0.05512 (13)0.55797 (8)0.5595 (4)0.0488 (5)
C1−0.20142 (19)0.49801 (11)1.1584 (5)0.0384 (6)
H1−0.17210.47421.27220.046*
C2−0.14636 (17)0.52287 (10)0.9812 (5)0.0356 (5)
H2−0.08010.51550.97290.043*
C3−0.19079 (17)0.55906 (10)0.8150 (4)0.0293 (5)
C4−0.29018 (18)0.56864 (11)0.8322 (5)0.0335 (5)
H4−0.32140.59290.72330.04*
C5−0.34193 (18)0.54211 (11)1.0107 (5)0.0387 (6)
H5−0.40850.54811.02170.046*
C6−0.13130 (17)0.58311 (10)0.6111 (5)0.0320 (5)
C70.2246 (2)0.76108 (12)−0.1226 (6)0.0454 (7)
H70.28480.7735−0.06750.055*
C80.17586 (17)0.71890 (11)0.0064 (5)0.0396 (6)
H80.20340.70270.14240.048*
C90.08482 (16)0.70091 (10)−0.0701 (5)0.0305 (5)
C100.0493 (2)0.72548 (12)−0.2753 (5)0.0384 (6)
H10−0.01140.7145−0.33260.046*
C110.1043 (2)0.76648 (11)−0.3955 (5)0.0433 (6)
H110.07970.7819−0.53610.052*
C120.02224 (18)0.65981 (11)0.0724 (5)0.0358 (6)
C130.34726 (17)0.57605 (10)0.1255 (4)0.0306 (5)
C140.40010 (19)0.61971 (11)0.2972 (5)0.0368 (6)
U11U22U33U12U13U23
Cl10.0384 (3)0.0586 (4)0.0395 (3)0.0069 (3)−0.0118 (3)0.0020 (3)
Cl20.1224 (9)0.0644 (5)0.0681 (6)−0.0526 (6)−0.0447 (6)0.0302 (5)
Cl30.0848 (6)0.0950 (6)0.0510 (5)0.0508 (5)−0.0198 (4)−0.0362 (5)
N10.0414 (12)0.0353 (11)0.0365 (13)−0.0078 (9)0.0084 (10)0.0028 (9)
N20.0375 (12)0.0379 (11)0.0435 (13)0.0082 (9)0.0147 (11)0.0077 (11)
N30.0423 (13)0.0351 (11)0.0503 (14)−0.0051 (9)0.0080 (11)0.0057 (10)
N40.0317 (12)0.0490 (14)0.0678 (17)0.0069 (10)0.0141 (12)0.0256 (13)
O10.0277 (9)0.0589 (12)0.0706 (14)0.0023 (8)−0.0027 (10)−0.0192 (12)
O20.0346 (9)0.0506 (10)0.0426 (10)0.0042 (8)−0.0017 (8)−0.0179 (9)
O30.0278 (9)0.0557 (11)0.0585 (13)0.0039 (8)0.0068 (9)0.0201 (10)
O40.0367 (10)0.0514 (11)0.0585 (14)0.0153 (8)0.0200 (9)0.0148 (10)
C10.0444 (15)0.0377 (13)0.0332 (15)0.0002 (11)−0.0051 (11)0.0055 (11)
C20.0307 (11)0.0348 (12)0.0413 (14)0.0014 (9)0.0001 (12)0.0002 (12)
C30.0297 (12)0.0279 (11)0.0304 (12)−0.0023 (9)0.0021 (10)−0.0034 (9)
C40.0300 (13)0.0340 (13)0.0364 (13)0.0012 (10)0.0031 (11)0.0044 (10)
C50.0347 (13)0.0381 (13)0.0435 (14)−0.0010 (10)0.0099 (12)0.0013 (12)
C60.0295 (12)0.0343 (12)0.0321 (12)−0.0013 (9)0.0071 (10)−0.0003 (11)
C70.0327 (14)0.0460 (16)0.0577 (18)−0.0081 (12)−0.0007 (12)0.0027 (14)
C80.0317 (12)0.0450 (14)0.0422 (15)0.0006 (10)−0.0029 (11)0.0061 (13)
C90.0288 (11)0.0289 (11)0.0337 (12)0.0018 (9)0.0050 (10)0.0020 (10)
C100.0337 (13)0.0412 (14)0.0404 (14)−0.0027 (11)−0.0053 (11)0.0025 (12)
C110.0490 (15)0.0441 (14)0.0369 (14)0.0005 (12)−0.0016 (13)0.0113 (13)
C120.0313 (13)0.0343 (12)0.0418 (15)0.0018 (10)0.0064 (11)0.0060 (11)
C130.0323 (12)0.0325 (11)0.0269 (11)−0.0016 (9)−0.0010 (10)−0.0008 (10)
C140.0435 (15)0.0342 (14)0.0327 (12)0.0039 (11)−0.0083 (11)−0.0023 (11)
Cl1—C141.772 (3)C1—H10.93
Cl2—C141.765 (3)C2—C31.387 (4)
Cl3—C141.762 (3)C2—H20.93
N1—C51.331 (4)C3—C41.391 (3)
N1—C11.340 (3)C3—C61.513 (3)
N1—H150.90 (3)C4—C51.372 (4)
N2—C61.322 (3)C4—H40.93
N2—H16A0.87 (3)C5—H50.93
N2—H16B0.90 (4)C7—C81.376 (4)
N3—C111.330 (4)C7—H70.93
N3—C71.335 (4)C8—C91.389 (3)
N4—C121.326 (3)C8—H80.93
N4—H17A0.91 (4)C9—C101.374 (4)
N4—H17B0.89 (4)C9—C121.503 (3)
O1—C131.220 (3)C10—C111.378 (4)
O2—C131.245 (3)C10—H100.93
O3—C121.234 (3)C11—H110.93
O4—C61.230 (3)C13—C141.564 (3)
C1—C21.375 (4)
C5—N1—C1121.8 (2)N3—C7—C8123.9 (3)
C5—N1—H15122 (2)N3—C7—H7118
C1—N1—H15116 (2)C8—C7—H7118
C6—N2—H16A120 (2)C7—C8—C9118.8 (3)
C6—N2—H16B116 (2)C7—C8—H8120.6
H16A—N2—H16B124 (3)C9—C8—H8120.6
C11—N3—C7116.4 (2)C10—C9—C8117.7 (2)
C12—N4—H17A118 (2)C10—C9—C12119.7 (2)
C12—N4—H17B123 (2)C8—C9—C12122.4 (2)
H17A—N4—H17B119 (3)C9—C10—C11119.4 (2)
N1—C1—C2120.3 (2)C9—C10—H10120.3
N1—C1—H1119.8C11—C10—H10120.3
C2—C1—H1119.8N3—C11—C10123.7 (3)
C1—C2—C3119.2 (2)N3—C11—H11118.1
C1—C2—H2120.4C10—C11—H11118.1
C3—C2—H2120.4O3—C12—N4123.4 (2)
C2—C3—C4118.7 (2)O3—C12—C9119.3 (2)
C2—C3—C6119.1 (2)N4—C12—C9117.3 (2)
C4—C3—C6122.1 (2)O1—C13—O2128.2 (2)
C5—C4—C3119.7 (2)O1—C13—C14117.2 (2)
C5—C4—H4120.2O2—C13—C14114.6 (2)
C3—C4—H4120.2C13—C14—Cl3112.49 (18)
N1—C5—C4120.2 (2)C13—C14—Cl2106.43 (18)
N1—C5—H5119.9Cl3—C14—Cl2109.97 (15)
C4—C5—H5119.9C13—C14—Cl1110.78 (17)
O4—C6—N2124.3 (2)Cl3—C14—Cl1107.15 (15)
O4—C6—C3118.4 (2)Cl2—C14—Cl1110.04 (15)
N2—C6—C3117.3 (2)
C5—N1—C1—C2−0.8 (4)C7—C8—C9—C12−173.6 (2)
N1—C1—C2—C31.1 (4)C8—C9—C10—C11−0.1 (4)
C1—C2—C3—C4−0.5 (4)C12—C9—C10—C11175.2 (2)
C1—C2—C3—C6−176.0 (2)C7—N3—C11—C101.5 (4)
C2—C3—C4—C5−0.4 (4)C9—C10—C11—N3−1.5 (4)
C6—C3—C4—C5175.0 (2)C10—C9—C12—O3−30.3 (4)
C1—N1—C5—C4−0.1 (4)C8—C9—C12—O3144.8 (3)
C3—C4—C5—N10.7 (4)C10—C9—C12—N4151.4 (3)
C2—C3—C6—O420.0 (4)C8—C9—C12—N4−33.5 (4)
C4—C3—C6—O4−155.4 (3)O1—C13—C14—Cl317.9 (3)
C2—C3—C6—N2−163.1 (2)O2—C13—C14—Cl3−163.93 (19)
C4—C3—C6—N221.5 (4)O1—C13—C14—Cl2−102.6 (3)
C11—N3—C7—C80.1 (4)O2—C13—C14—Cl275.6 (2)
N3—C7—C8—C9−1.6 (4)O1—C13—C14—Cl1137.8 (2)
C7—C8—C9—C101.5 (4)O2—C13—C14—Cl1−44.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H15···O2i0.90 (3)1.78 (3)2.679 (3)175 (3)
N2—H16A···N3ii0.87 (3)2.11 (3)2.958 (3)164 (3)
N2—H16B···O30.90 (4)1.99 (4)2.887 (3)178 (3)
N4—H17A···O40.91 (4)2.08 (4)2.972 (3)167 (4)
N4—H17B···O10.89 (4)1.98 (4)2.839 (3)160 (3)
C1—H1···O1i0.932.583.211 (3)126
C2—H2···O4iii0.932.553.358 (3)146
C7—H7···O3iv0.932.583.489 (3)166
C11—H11···Cl2v0.932.823.711 (3)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H15⋯O2i 0.90 (3)1.78 (3)2.679 (3)175 (3)
N2—H16A⋯N3ii 0.87 (3)2.11 (3)2.958 (3)164 (3)
N2—H16B⋯O30.90 (4)1.99 (4)2.887 (3)178 (3)
N4—H17A⋯O40.91 (4)2.08 (4)2.972 (3)167 (4)
N4—H17B⋯O10.89 (4)1.98 (4)2.839 (3)160 (3)
C1—H1⋯O1i 0.932.583.211 (3)126
C2—H2⋯O4iii 0.932.553.358 (3)146
C7—H7⋯O3iv 0.932.583.489 (3)166
C11—H11⋯Cl2v 0.932.823.711 (3)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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2.  A short history of SHELX.

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3.  Isonicotinamide-2-naphthoic acid (1/1).

Authors:  Lee G Madeley; Demetrius C Levendis; Andreas Lemmerer
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