| Literature DB >> 22969688 |
Abstract
In the crystal structure of the title 1:1 co-crystal, C(6)H(7)N(2)O(+)·C(2)Cl(3)O(2) (-)·C(6)H(6)N(2)O, the amide groups of the 4-carbamoylpyridin-1-ium ion and the isonicotinamide mol-ecule are twisted out of the plane of the aromatic ring with C-C-C-N torsion angles of 21.5 (4) and -33.5 (4)°, respectively. The 4-carbamoylpyridin-1-ium and isonicotinamide amide groups form R(2) (2)(8) hydrogen-bonded dimers via N-H⋯O=C inter-actions. The two remaining amide H atoms (i) link dimers via the cation to an isonicotinamide and (ii) from the isonicotinamide to a trichloro-acetate anion. The pyridinium H atom also forms an N-H⋯O hydrogen bond with the trichloro-acetate anion. Due to the extended hydrogen bonding, including C-H⋯O and C-H⋯Cl interactions, all components in the structure aggregate into a three-dimensional supra-molecular framework.Entities:
Year: 2012 PMID: 22969688 PMCID: PMC3435842 DOI: 10.1107/S1600536812037002
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H7N2O+·C2Cl3O2−·C6H6N2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 7898 reflections |
| θ = 3.1–30.4° | |
| µ = 0.55 mm−1 | |
| Prism, colourless | |
| 0.4 × 0.1 × 0.1 mm |
| Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer | 4017 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 3575 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4933 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 16297 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 4017 reflections | Δρmax = 0.41 e Å−3 |
| 241 parameters | Δρmin = −0.57 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1791 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.01 (6) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.49348 (5) | 0.58322 (3) | 0.45563 (14) | 0.04547 (17) | |
| Cl2 | 0.44990 (9) | 0.67585 (4) | 0.11741 (18) | 0.0850 (4) | |
| Cl3 | 0.32105 (7) | 0.65069 (5) | 0.50880 (15) | 0.0770 (3) | |
| N1 | −0.29717 (16) | 0.50785 (9) | 1.1681 (4) | 0.0377 (5) | |
| H15 | −0.330 (2) | 0.4892 (15) | 1.285 (6) | 0.057* | |
| N2 | −0.16743 (16) | 0.62843 (10) | 0.4929 (5) | 0.0396 (5) | |
| H16A | −0.217 (2) | 0.6478 (14) | 0.551 (7) | 0.059* | |
| H16B | −0.135 (3) | 0.6394 (15) | 0.362 (6) | 0.059* | |
| N3 | 0.19060 (17) | 0.78523 (10) | −0.3220 (5) | 0.0425 (5) | |
| N4 | 0.06680 (19) | 0.61873 (11) | 0.1998 (5) | 0.0495 (7) | |
| H17A | 0.030 (3) | 0.5952 (17) | 0.294 (8) | 0.074* | |
| H17B | 0.131 (3) | 0.6133 (15) | 0.197 (7) | 0.074* | |
| O1 | 0.25905 (13) | 0.57929 (9) | 0.1146 (4) | 0.0524 (5) | |
| O2 | 0.40234 (13) | 0.54301 (8) | 0.0115 (4) | 0.0426 (4) | |
| O3 | −0.06660 (12) | 0.66646 (9) | 0.0707 (4) | 0.0473 (5) | |
| O4 | −0.05512 (13) | 0.55797 (8) | 0.5595 (4) | 0.0488 (5) | |
| C1 | −0.20142 (19) | 0.49801 (11) | 1.1584 (5) | 0.0384 (6) | |
| H1 | −0.1721 | 0.4742 | 1.2722 | 0.046* | |
| C2 | −0.14636 (17) | 0.52287 (10) | 0.9812 (5) | 0.0356 (5) | |
| H2 | −0.0801 | 0.5155 | 0.9729 | 0.043* | |
| C3 | −0.19079 (17) | 0.55906 (10) | 0.8150 (4) | 0.0293 (5) | |
| C4 | −0.29018 (18) | 0.56864 (11) | 0.8322 (5) | 0.0335 (5) | |
| H4 | −0.3214 | 0.5929 | 0.7233 | 0.04* | |
| C5 | −0.34193 (18) | 0.54211 (11) | 1.0107 (5) | 0.0387 (6) | |
| H5 | −0.4085 | 0.5481 | 1.0217 | 0.046* | |
| C6 | −0.13130 (17) | 0.58311 (10) | 0.6111 (5) | 0.0320 (5) | |
| C7 | 0.2246 (2) | 0.76108 (12) | −0.1226 (6) | 0.0454 (7) | |
| H7 | 0.2848 | 0.7735 | −0.0675 | 0.055* | |
| C8 | 0.17586 (17) | 0.71890 (11) | 0.0064 (5) | 0.0396 (6) | |
| H8 | 0.2034 | 0.7027 | 0.1424 | 0.048* | |
| C9 | 0.08482 (16) | 0.70091 (10) | −0.0701 (5) | 0.0305 (5) | |
| C10 | 0.0493 (2) | 0.72548 (12) | −0.2753 (5) | 0.0384 (6) | |
| H10 | −0.0114 | 0.7145 | −0.3326 | 0.046* | |
| C11 | 0.1043 (2) | 0.76648 (11) | −0.3955 (5) | 0.0433 (6) | |
| H11 | 0.0797 | 0.7819 | −0.5361 | 0.052* | |
| C12 | 0.02224 (18) | 0.65981 (11) | 0.0724 (5) | 0.0358 (6) | |
| C13 | 0.34726 (17) | 0.57605 (10) | 0.1255 (4) | 0.0306 (5) | |
| C14 | 0.40010 (19) | 0.61971 (11) | 0.2972 (5) | 0.0368 (6) |
| Cl1 | 0.0384 (3) | 0.0586 (4) | 0.0395 (3) | 0.0069 (3) | −0.0118 (3) | 0.0020 (3) |
| Cl2 | 0.1224 (9) | 0.0644 (5) | 0.0681 (6) | −0.0526 (6) | −0.0447 (6) | 0.0302 (5) |
| Cl3 | 0.0848 (6) | 0.0950 (6) | 0.0510 (5) | 0.0508 (5) | −0.0198 (4) | −0.0362 (5) |
| N1 | 0.0414 (12) | 0.0353 (11) | 0.0365 (13) | −0.0078 (9) | 0.0084 (10) | 0.0028 (9) |
| N2 | 0.0375 (12) | 0.0379 (11) | 0.0435 (13) | 0.0082 (9) | 0.0147 (11) | 0.0077 (11) |
| N3 | 0.0423 (13) | 0.0351 (11) | 0.0503 (14) | −0.0051 (9) | 0.0080 (11) | 0.0057 (10) |
| N4 | 0.0317 (12) | 0.0490 (14) | 0.0678 (17) | 0.0069 (10) | 0.0141 (12) | 0.0256 (13) |
| O1 | 0.0277 (9) | 0.0589 (12) | 0.0706 (14) | 0.0023 (8) | −0.0027 (10) | −0.0192 (12) |
| O2 | 0.0346 (9) | 0.0506 (10) | 0.0426 (10) | 0.0042 (8) | −0.0017 (8) | −0.0179 (9) |
| O3 | 0.0278 (9) | 0.0557 (11) | 0.0585 (13) | 0.0039 (8) | 0.0068 (9) | 0.0201 (10) |
| O4 | 0.0367 (10) | 0.0514 (11) | 0.0585 (14) | 0.0153 (8) | 0.0200 (9) | 0.0148 (10) |
| C1 | 0.0444 (15) | 0.0377 (13) | 0.0332 (15) | 0.0002 (11) | −0.0051 (11) | 0.0055 (11) |
| C2 | 0.0307 (11) | 0.0348 (12) | 0.0413 (14) | 0.0014 (9) | 0.0001 (12) | 0.0002 (12) |
| C3 | 0.0297 (12) | 0.0279 (11) | 0.0304 (12) | −0.0023 (9) | 0.0021 (10) | −0.0034 (9) |
| C4 | 0.0300 (13) | 0.0340 (13) | 0.0364 (13) | 0.0012 (10) | 0.0031 (11) | 0.0044 (10) |
| C5 | 0.0347 (13) | 0.0381 (13) | 0.0435 (14) | −0.0010 (10) | 0.0099 (12) | 0.0013 (12) |
| C6 | 0.0295 (12) | 0.0343 (12) | 0.0321 (12) | −0.0013 (9) | 0.0071 (10) | −0.0003 (11) |
| C7 | 0.0327 (14) | 0.0460 (16) | 0.0577 (18) | −0.0081 (12) | −0.0007 (12) | 0.0027 (14) |
| C8 | 0.0317 (12) | 0.0450 (14) | 0.0422 (15) | 0.0006 (10) | −0.0029 (11) | 0.0061 (13) |
| C9 | 0.0288 (11) | 0.0289 (11) | 0.0337 (12) | 0.0018 (9) | 0.0050 (10) | 0.0020 (10) |
| C10 | 0.0337 (13) | 0.0412 (14) | 0.0404 (14) | −0.0027 (11) | −0.0053 (11) | 0.0025 (12) |
| C11 | 0.0490 (15) | 0.0441 (14) | 0.0369 (14) | 0.0005 (12) | −0.0016 (13) | 0.0113 (13) |
| C12 | 0.0313 (13) | 0.0343 (12) | 0.0418 (15) | 0.0018 (10) | 0.0064 (11) | 0.0060 (11) |
| C13 | 0.0323 (12) | 0.0325 (11) | 0.0269 (11) | −0.0016 (9) | −0.0010 (10) | −0.0008 (10) |
| C14 | 0.0435 (15) | 0.0342 (14) | 0.0327 (12) | 0.0039 (11) | −0.0083 (11) | −0.0023 (11) |
| Cl1—C14 | 1.772 (3) | C1—H1 | 0.93 |
| Cl2—C14 | 1.765 (3) | C2—C3 | 1.387 (4) |
| Cl3—C14 | 1.762 (3) | C2—H2 | 0.93 |
| N1—C5 | 1.331 (4) | C3—C4 | 1.391 (3) |
| N1—C1 | 1.340 (3) | C3—C6 | 1.513 (3) |
| N1—H15 | 0.90 (3) | C4—C5 | 1.372 (4) |
| N2—C6 | 1.322 (3) | C4—H4 | 0.93 |
| N2—H16A | 0.87 (3) | C5—H5 | 0.93 |
| N2—H16B | 0.90 (4) | C7—C8 | 1.376 (4) |
| N3—C11 | 1.330 (4) | C7—H7 | 0.93 |
| N3—C7 | 1.335 (4) | C8—C9 | 1.389 (3) |
| N4—C12 | 1.326 (3) | C8—H8 | 0.93 |
| N4—H17A | 0.91 (4) | C9—C10 | 1.374 (4) |
| N4—H17B | 0.89 (4) | C9—C12 | 1.503 (3) |
| O1—C13 | 1.220 (3) | C10—C11 | 1.378 (4) |
| O2—C13 | 1.245 (3) | C10—H10 | 0.93 |
| O3—C12 | 1.234 (3) | C11—H11 | 0.93 |
| O4—C6 | 1.230 (3) | C13—C14 | 1.564 (3) |
| C1—C2 | 1.375 (4) | ||
| C5—N1—C1 | 121.8 (2) | N3—C7—C8 | 123.9 (3) |
| C5—N1—H15 | 122 (2) | N3—C7—H7 | 118 |
| C1—N1—H15 | 116 (2) | C8—C7—H7 | 118 |
| C6—N2—H16A | 120 (2) | C7—C8—C9 | 118.8 (3) |
| C6—N2—H16B | 116 (2) | C7—C8—H8 | 120.6 |
| H16A—N2—H16B | 124 (3) | C9—C8—H8 | 120.6 |
| C11—N3—C7 | 116.4 (2) | C10—C9—C8 | 117.7 (2) |
| C12—N4—H17A | 118 (2) | C10—C9—C12 | 119.7 (2) |
| C12—N4—H17B | 123 (2) | C8—C9—C12 | 122.4 (2) |
| H17A—N4—H17B | 119 (3) | C9—C10—C11 | 119.4 (2) |
| N1—C1—C2 | 120.3 (2) | C9—C10—H10 | 120.3 |
| N1—C1—H1 | 119.8 | C11—C10—H10 | 120.3 |
| C2—C1—H1 | 119.8 | N3—C11—C10 | 123.7 (3) |
| C1—C2—C3 | 119.2 (2) | N3—C11—H11 | 118.1 |
| C1—C2—H2 | 120.4 | C10—C11—H11 | 118.1 |
| C3—C2—H2 | 120.4 | O3—C12—N4 | 123.4 (2) |
| C2—C3—C4 | 118.7 (2) | O3—C12—C9 | 119.3 (2) |
| C2—C3—C6 | 119.1 (2) | N4—C12—C9 | 117.3 (2) |
| C4—C3—C6 | 122.1 (2) | O1—C13—O2 | 128.2 (2) |
| C5—C4—C3 | 119.7 (2) | O1—C13—C14 | 117.2 (2) |
| C5—C4—H4 | 120.2 | O2—C13—C14 | 114.6 (2) |
| C3—C4—H4 | 120.2 | C13—C14—Cl3 | 112.49 (18) |
| N1—C5—C4 | 120.2 (2) | C13—C14—Cl2 | 106.43 (18) |
| N1—C5—H5 | 119.9 | Cl3—C14—Cl2 | 109.97 (15) |
| C4—C5—H5 | 119.9 | C13—C14—Cl1 | 110.78 (17) |
| O4—C6—N2 | 124.3 (2) | Cl3—C14—Cl1 | 107.15 (15) |
| O4—C6—C3 | 118.4 (2) | Cl2—C14—Cl1 | 110.04 (15) |
| N2—C6—C3 | 117.3 (2) | ||
| C5—N1—C1—C2 | −0.8 (4) | C7—C8—C9—C12 | −173.6 (2) |
| N1—C1—C2—C3 | 1.1 (4) | C8—C9—C10—C11 | −0.1 (4) |
| C1—C2—C3—C4 | −0.5 (4) | C12—C9—C10—C11 | 175.2 (2) |
| C1—C2—C3—C6 | −176.0 (2) | C7—N3—C11—C10 | 1.5 (4) |
| C2—C3—C4—C5 | −0.4 (4) | C9—C10—C11—N3 | −1.5 (4) |
| C6—C3—C4—C5 | 175.0 (2) | C10—C9—C12—O3 | −30.3 (4) |
| C1—N1—C5—C4 | −0.1 (4) | C8—C9—C12—O3 | 144.8 (3) |
| C3—C4—C5—N1 | 0.7 (4) | C10—C9—C12—N4 | 151.4 (3) |
| C2—C3—C6—O4 | 20.0 (4) | C8—C9—C12—N4 | −33.5 (4) |
| C4—C3—C6—O4 | −155.4 (3) | O1—C13—C14—Cl3 | 17.9 (3) |
| C2—C3—C6—N2 | −163.1 (2) | O2—C13—C14—Cl3 | −163.93 (19) |
| C4—C3—C6—N2 | 21.5 (4) | O1—C13—C14—Cl2 | −102.6 (3) |
| C11—N3—C7—C8 | 0.1 (4) | O2—C13—C14—Cl2 | 75.6 (2) |
| N3—C7—C8—C9 | −1.6 (4) | O1—C13—C14—Cl1 | 137.8 (2) |
| C7—C8—C9—C10 | 1.5 (4) | O2—C13—C14—Cl1 | −44.0 (3) |
| H··· | ||||
| N1—H15···O2i | 0.90 (3) | 1.78 (3) | 2.679 (3) | 175 (3) |
| N2—H16 | 0.87 (3) | 2.11 (3) | 2.958 (3) | 164 (3) |
| N2—H16 | 0.90 (4) | 1.99 (4) | 2.887 (3) | 178 (3) |
| N4—H17 | 0.91 (4) | 2.08 (4) | 2.972 (3) | 167 (4) |
| N4—H17 | 0.89 (4) | 1.98 (4) | 2.839 (3) | 160 (3) |
| C1—H1···O1i | 0.93 | 2.58 | 3.211 (3) | 126 |
| C2—H2···O4iii | 0.93 | 2.55 | 3.358 (3) | 146 |
| C7—H7···O3iv | 0.93 | 2.58 | 3.489 (3) | 166 |
| C11—H11···Cl2v | 0.93 | 2.82 | 3.711 (3) | 162 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H15⋯O2i | 0.90 (3) | 1.78 (3) | 2.679 (3) | 175 (3) |
| N2—H16 | 0.87 (3) | 2.11 (3) | 2.958 (3) | 164 (3) |
| N2—H16 | 0.90 (4) | 1.99 (4) | 2.887 (3) | 178 (3) |
| N4—H17 | 0.91 (4) | 2.08 (4) | 2.972 (3) | 167 (4) |
| N4—H17 | 0.89 (4) | 1.98 (4) | 2.839 (3) | 160 (3) |
| C1—H1⋯O1i | 0.93 | 2.58 | 3.211 (3) | 126 |
| C2—H2⋯O4iii | 0.93 | 2.55 | 3.358 (3) | 146 |
| C7—H7⋯O3iv | 0.93 | 2.58 | 3.489 (3) | 166 |
| C11—H11⋯Cl2v | 0.93 | 2.82 | 3.711 (3) | 162 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .