Literature DB >> 22199921

Isonicotinamide-2-naphthoic acid (1/1).

Lee G Madeley1, Demetrius C Levendis, Andreas Lemmerer.   

Abstract

In the title 1:1 adduct, C(6)H(6)N(2)O·C(11)H(8)O(2), the amide group is slightly twisted out of the plane of the aromatic ring, with a C-C-C-N torsion angle of 25.11 (19)°, whereas the carb-oxy-lic acid group is approximately coplanar with the bicylic ring system, with a C-C-C-O torsion angle of 10.9 (2)°. The amide groups from two isonicotinamide mol-ecules form a dimer via N-H⋯O hydrogen bonds. In addition, the 2-naphthanoic acid mol-ecule is hydrogen bonded to the pyridine unit of an isonicotinamide mol-ecule via an O-H⋯N hydrogen bond. This gives rise to a centrosymmetric four-mol-ecule chain, which is cross-linked by further N-H⋯O hydrogen bonds from the amide group.

Entities:  

Year:  2011        PMID: 22199921      PMCID: PMC3239073          DOI: 10.1107/S1600536811050057

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds, see: Lemmerer et al. (2008 ▶); Aakeröy et al. (2002 ▶); Báthori et al. (2010 ▶). The carb­oxy­lic acidpyridine hydrogen bond is an often used supra­molecular synthon, see: Aakeröy & Beatty (2001 ▶).

Experimental

Crystal data

C6H6N2O·C11H8O2 M = 294.3 Monoclinic, a = 8.6665 (17) Å b = 23.752 (5) Å c = 7.3793 (15) Å β = 110.33 (3)° V = 1424.4 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.48 × 0.45 × 0.08 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: integration (XPREP; Bruker, 2007 ▶) T min = 0.956, T max = 0.993 7507 measured reflections 2605 independent reflections 2130 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.119 S = 1.01 2605 reflections 211 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT-Plus (Bruker, 2007 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811050057/fj2462sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050057/fj2462Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811050057/fj2462Isup3.mol Supplementary material file. DOI: 10.1107/S1600536811050057/fj2462Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6N2O·C11H8O2F(000) = 616
Mr = 294.3Dx = 1.372 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5555 reflections
a = 8.6665 (17) Åθ = 1–27.5°
b = 23.752 (5) ŵ = 0.10 mm1
c = 7.3793 (15) ÅT = 173 K
β = 110.33 (3)°Block, colourless
V = 1424.4 (5) Å30.48 × 0.45 × 0.08 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2130 reflections with I > 2σ(I)
ω scansRint = 0.055
Absorption correction: integration (XPREP; Bruker, 2007)θmax = 25.5°, θmin = 3.0°
Tmin = 0.956, Tmax = 0.993h = −10→10
7507 measured reflectionsk = −28→27
2605 independent reflectionsl = −8→7
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.041w = 1/[σ2(Fo2) + (0.0731P)2 + 0.1531P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.119(Δ/σ)max < 0.001
S = 1.01Δρmax = 0.21 e Å3
2605 reflectionsΔρmin = −0.20 e Å3
211 parameters
Experimental. Numerical integration absorption corrections based on indexed crystal faces were applied using the XPREP routine (Bruker, 2004)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C11.10423 (17)0.44738 (6)0.71685 (18)0.0248 (3)
C21.08405 (18)0.40155 (6)0.59333 (19)0.0281 (3)
H2A1.17690.38290.58090.034*
C30.92709 (18)0.38371 (7)0.48958 (19)0.0325 (4)
H30.91430.35180.40790.039*
C40.81087 (18)0.45238 (7)0.6185 (2)0.0329 (4)
H40.71570.47030.6270.039*
C50.96357 (17)0.47215 (6)0.7311 (2)0.0292 (3)
H50.97270.50250.81790.035*
C61.26979 (17)0.47009 (6)0.83740 (19)0.0271 (3)
N11.39399 (17)0.46082 (6)0.77495 (19)0.0324 (3)
H1S1.496 (2)0.4727 (7)0.846 (2)0.036 (4)*
H1A1.375 (2)0.4460 (8)0.663 (3)0.042 (5)*
N20.79178 (15)0.40878 (6)0.49762 (16)0.0335 (3)
O11.28451 (13)0.49617 (5)0.98726 (14)0.0371 (3)
C70.23811 (17)0.35294 (6)0.12753 (18)0.0257 (3)
C80.25613 (18)0.30807 (6)0.00900 (19)0.0301 (3)
H80.3630.29620.01720.036*
C90.12123 (18)0.28196 (6)−0.11624 (19)0.0313 (4)
H90.13540.2517−0.19310.038*
C10−0.03974 (17)0.29913 (6)−0.13394 (19)0.0267 (3)
C11−0.18280 (19)0.27324 (7)−0.2630 (2)0.0350 (4)
H11−0.17220.2426−0.34070.042*
C12−0.33562 (19)0.29162 (7)−0.2774 (2)0.0382 (4)
H12−0.43010.2737−0.36520.046*
C13−0.35493 (19)0.33669 (7)−0.1639 (2)0.0355 (4)
H13−0.46210.3489−0.17450.043*
C14−0.21997 (17)0.36309 (6)−0.0382 (2)0.0289 (3)
H14−0.23410.39380.03710.035*
C15−0.05903 (16)0.34512 (6)−0.01926 (18)0.0243 (3)
C160.08343 (17)0.37060 (6)0.11132 (18)0.0246 (3)
H160.07170.40080.190.03*
C170.38436 (18)0.38080 (6)0.2707 (2)0.0302 (3)
O20.52342 (13)0.36681 (6)0.25195 (16)0.0444 (3)
H20.624 (3)0.3858 (10)0.359 (3)0.085 (7)*
O30.37325 (13)0.41309 (5)0.39438 (14)0.0404 (3)
U11U22U33U12U13U23
C10.0286 (8)0.0233 (7)0.0214 (6)−0.0021 (6)0.0072 (6)0.0041 (5)
C20.0270 (8)0.0301 (8)0.0269 (7)−0.0037 (6)0.0091 (6)−0.0028 (6)
C30.0341 (9)0.0365 (9)0.0271 (7)−0.0082 (7)0.0109 (6)−0.0049 (6)
C40.0282 (8)0.0393 (9)0.0319 (8)0.0055 (7)0.0112 (6)0.0092 (7)
C50.0339 (8)0.0251 (8)0.0288 (7)0.0010 (6)0.0112 (6)0.0022 (6)
C60.0298 (8)0.0236 (8)0.0252 (7)−0.0030 (6)0.0061 (6)0.0005 (6)
N10.0279 (7)0.0398 (8)0.0278 (6)−0.0076 (6)0.0076 (5)−0.0106 (6)
N20.0276 (7)0.0444 (9)0.0267 (6)−0.0059 (6)0.0069 (5)0.0025 (6)
O10.0361 (6)0.0413 (7)0.0340 (6)−0.0097 (5)0.0121 (5)−0.0167 (5)
C70.0271 (8)0.0270 (8)0.0230 (6)−0.0014 (6)0.0087 (6)0.0021 (6)
C80.0286 (8)0.0304 (8)0.0317 (7)0.0044 (6)0.0112 (6)−0.0011 (6)
C90.0379 (9)0.0264 (8)0.0305 (7)0.0026 (6)0.0130 (7)−0.0056 (6)
C100.0327 (8)0.0213 (7)0.0258 (7)−0.0020 (6)0.0098 (6)0.0008 (6)
C110.0413 (9)0.0280 (8)0.0334 (8)−0.0074 (7)0.0099 (7)−0.0056 (6)
C120.0316 (9)0.0385 (10)0.0381 (8)−0.0129 (7)0.0038 (7)−0.0021 (7)
C130.0259 (8)0.0379 (9)0.0411 (8)0.0003 (7)0.0098 (6)0.0079 (7)
C140.0301 (8)0.0261 (8)0.0312 (7)0.0021 (6)0.0115 (6)0.0036 (6)
C150.0281 (8)0.0207 (7)0.0244 (6)−0.0009 (6)0.0095 (6)0.0034 (5)
C160.0300 (8)0.0206 (7)0.0233 (7)−0.0008 (6)0.0093 (6)−0.0006 (5)
C170.0295 (8)0.0356 (9)0.0249 (7)−0.0026 (7)0.0088 (6)0.0009 (6)
O20.0242 (6)0.0654 (9)0.0411 (6)−0.0041 (5)0.0081 (5)−0.0160 (6)
O30.0369 (7)0.0517 (8)0.0316 (6)−0.0080 (5)0.0107 (5)−0.0149 (5)
C1—C51.390 (2)C8—H80.95
C1—C21.3912 (19)C9—C101.415 (2)
C1—C61.501 (2)C9—H90.95
C2—C31.376 (2)C10—C111.415 (2)
C2—H2A0.95C10—C151.4269 (19)
C3—N21.335 (2)C11—C121.363 (2)
C3—H30.95C11—H110.95
C4—N21.339 (2)C12—C131.405 (2)
C4—C51.378 (2)C12—H120.95
C4—H40.95C13—C141.366 (2)
C5—H50.95C13—H130.95
C6—O11.2349 (16)C14—C151.4182 (19)
C6—N11.3282 (19)C14—H140.95
N1—H1S0.904 (19)C15—C161.412 (2)
N1—H1A0.862 (18)C16—H160.95
C7—C161.370 (2)C17—O31.2215 (17)
C7—C81.421 (2)C17—O21.3029 (18)
C7—C171.493 (2)O2—H21.05 (3)
C8—C91.362 (2)
C5—C1—C2117.82 (13)C8—C9—C10121.18 (13)
C5—C1—C6119.06 (13)C8—C9—H9119.4
C2—C1—C6123.10 (13)C10—C9—H9119.4
C3—C2—C1118.72 (14)C11—C10—C9122.83 (14)
C3—C2—H2A120.6C11—C10—C15118.43 (13)
C1—C2—H2A120.6C9—C10—C15118.73 (13)
N2—C3—C2123.51 (14)C12—C11—C10120.93 (14)
N2—C3—H3118.2C12—C11—H11119.5
C2—C3—H3118.2C10—C11—H11119.5
N2—C4—C5122.39 (14)C11—C12—C13120.75 (14)
N2—C4—H4118.8C11—C12—H12119.6
C5—C4—H4118.8C13—C12—H12119.6
C4—C5—C1119.62 (14)C14—C13—C12120.20 (14)
C4—C5—H5120.2C14—C13—H13119.9
C1—C5—H5120.2C12—C13—H13119.9
O1—C6—N1123.36 (14)C13—C14—C15120.63 (14)
O1—C6—C1119.40 (13)C13—C14—H14119.7
N1—C6—C1117.24 (12)C15—C14—H14119.7
C6—N1—H1S119.8 (10)C16—C15—C14122.37 (13)
C6—N1—H1A119.9 (12)C16—C15—C10118.57 (12)
H1S—N1—H1A120.1 (15)C14—C15—C10119.06 (13)
C3—N2—C4117.87 (13)C7—C16—C15121.72 (13)
C16—C7—C8119.30 (13)C7—C16—H16119.1
C16—C7—C17119.37 (13)C15—C16—H16119.1
C8—C7—C17121.32 (13)O3—C17—O2123.73 (14)
C9—C8—C7120.47 (13)O3—C17—C7122.62 (13)
C9—C8—H8119.8O2—C17—C7113.65 (13)
C7—C8—H8119.8C17—O2—H2111.5 (13)
C5—C1—C2—C31.1 (2)C15—C10—C11—C12−0.2 (2)
C6—C1—C2—C3179.67 (12)C10—C11—C12—C13−0.2 (2)
C1—C2—C3—N21.5 (2)C11—C12—C13—C140.6 (2)
N2—C4—C5—C11.7 (2)C12—C13—C14—C15−0.6 (2)
C2—C1—C5—C4−2.6 (2)C13—C14—C15—C16−178.83 (12)
C6—C1—C5—C4178.77 (12)C13—C14—C15—C100.2 (2)
C5—C1—C6—O123.6 (2)C11—C10—C15—C16179.24 (12)
C2—C1—C6—O1−155.01 (14)C9—C10—C15—C16−1.78 (19)
C5—C1—C6—N1−156.32 (13)C11—C10—C15—C140.13 (19)
C2—C1—C6—N125.11 (19)C9—C10—C15—C14179.11 (12)
C2—C3—N2—C4−2.4 (2)C8—C7—C16—C150.5 (2)
C5—C4—N2—C30.8 (2)C17—C7—C16—C15−178.93 (11)
C16—C7—C8—C9−1.5 (2)C14—C15—C16—C7−179.74 (12)
C17—C7—C8—C9177.85 (13)C10—C15—C16—C71.2 (2)
C7—C8—C9—C100.9 (2)C16—C7—C17—O311.1 (2)
C8—C9—C10—C11179.69 (13)C8—C7—C17—O3−168.30 (14)
C8—C9—C10—C150.8 (2)C16—C7—C17—O2−169.70 (13)
C9—C10—C11—C12−179.09 (14)C8—C7—C17—O210.9 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1S···O1i0.904 (19)2.012 (19)2.914 (2)176 (2)
N1—H1A···O3ii0.862 (18)2.123 (18)2.9755 (17)170 (2)
O2—H2···N21.05 (3)1.56 (3)2.5999 (18)170 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1S⋯O1i0.904 (19)2.012 (19)2.914 (2)176 (2)
N1—H1A⋯O3ii0.862 (18)2.123 (18)2.9755 (17)170 (2)
O2—H2⋯N21.05 (3)1.56 (3)2.5999 (18)170 (2)

Symmetry codes: (i) ; (ii) .

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4.  Structure validation in chemical crystallography.

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