Literature DB >> 22969654

N-(1,4-Dioxo-1,4-dihydro-naphthalen-2-yl)benzamide.

Yakini Brandy1, Ray J Butcher, Oladapo Bakare.   

Abstract

The title compound, C(17)H(11)NO(3), was an inter-mediate synthesized during bis-acyl-ation of 2-amino-1,4-naphtho-quinone with benzoyl chloride. A mixture of block- and needle-shaped crystals were obtained after column chromatography. The block-shaped crystals were identified as the imide and the needles were the title amide. The naphtho-quinone scaffold is roughly planar (r.m.s. deviation = 0.047 Å for the C atoms). The N-H and C=O bonds of the amide group are anti to each other. A dihedral angle between the naphtho-quinone ring system and the amide group of 3.56 (3)°, accompanied by a dihedral angle between the amide group and the phenyl group of 9.51 (3)°, makes the naphtho-quinone ring essentially coplanar with the phenyl ring [dihedral angle = 7.12 (1)°]. In the crystal, molecules are linked by a weak N-H⋯O hydrogen bond and by two weak C-H⋯O interactions leading to the formation of zigzag chains along [010].

Entities:  

Year:  2012        PMID: 22969654      PMCID: PMC3435808          DOI: 10.1107/S1600536812034150

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar crystal structures, see: Brandy et al. (2009 ▶, 2012 ▶); Akinboye et al. (2009a ▶,b ▶). For the pharmacological properties of related compounds, see: Bakare et al. (2003 ▶); Berhe et al. (2008 ▶); Lien et al. (1997 ▶); Huang, et al. (2005 ▶); Khraiwesh et al. (2011 ▶).

Experimental

Crystal data

C17H11NO3 M = 277.27 Monoclinic, a = 6.9433 (3) Å b = 12.0112 (4) Å c = 15.2129 (5) Å β = 94.129 (3)° V = 1265.42 (8) Å3 Z = 4 Cu Kα radiation μ = 0.83 mm−1 T = 123 K 0.67 × 0.12 × 0.08 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007 ▶) T min = 0.819, T max = 1.000 4550 measured reflections 2553 independent reflections 2123 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.148 S = 1.05 2553 reflections 190 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812034150/bt5965sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812034150/bt5965Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812034150/bt5965Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H11NO3F(000) = 576
Mr = 277.27Dx = 1.455 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
a = 6.9433 (3) ÅCell parameters from 1585 reflections
b = 12.0112 (4) Åθ = 2.9–75.6°
c = 15.2129 (5) ŵ = 0.83 mm1
β = 94.129 (3)°T = 123 K
V = 1265.42 (8) Å3Needle, pale yellow orange
Z = 40.67 × 0.12 × 0.08 mm
Oxford Diffraction Xcalibur Ruby Gemini diffractometer2553 independent reflections
Radiation source: Enhance (Cu) X-ray Source2123 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
Detector resolution: 10.5081 pixels mm-1θmax = 75.7°, θmin = 4.7°
ω scansh = −7→8
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007)k = −14→14
Tmin = 0.819, Tmax = 1.000l = −18→18
4550 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.148H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0937P)2] where P = (Fo2 + 2Fc2)/3
2553 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4411 (2)0.09807 (11)0.24463 (8)0.0373 (3)
O20.3847 (2)0.51857 (10)0.13486 (8)0.0348 (3)
O30.3674 (2)0.41588 (11)0.43416 (8)0.0354 (3)
N10.3825 (2)0.24883 (12)0.36581 (9)0.0273 (3)
H1A0.38210.17630.37410.033*
C10.3905 (2)0.28621 (14)0.27989 (10)0.0253 (4)
C20.4119 (2)0.19196 (14)0.21661 (10)0.0269 (4)
C30.3957 (2)0.21822 (14)0.12102 (10)0.0252 (4)
C40.3886 (2)0.13177 (15)0.05992 (11)0.0299 (4)
H4A0.39600.05660.07930.036*
C50.3707 (2)0.15588 (15)−0.02938 (11)0.0314 (4)
H5A0.36290.0971−0.07130.038*
C60.3641 (2)0.26586 (16)−0.05777 (11)0.0320 (4)
H6A0.35470.2820−0.11910.038*
C70.3713 (2)0.35219 (15)0.00297 (11)0.0290 (4)
H7A0.36700.4272−0.01680.035*
C80.3848 (2)0.32888 (14)0.09291 (10)0.0251 (4)
C90.3872 (2)0.42102 (14)0.15843 (10)0.0266 (4)
C100.3855 (2)0.39248 (14)0.25204 (10)0.0270 (4)
H10A0.38070.45060.29420.032*
C110.3750 (2)0.31531 (14)0.43956 (10)0.0261 (3)
C120.3814 (2)0.25771 (14)0.52731 (10)0.0252 (4)
C130.4058 (2)0.32638 (15)0.60106 (11)0.0294 (4)
H13A0.41420.40470.59380.035*
C140.4181 (3)0.28079 (16)0.68528 (11)0.0324 (4)
H14A0.43530.32790.73540.039*
C150.4050 (2)0.16642 (16)0.69612 (11)0.0316 (4)
H15A0.41370.13520.75360.038*
C160.3794 (2)0.09777 (15)0.62296 (11)0.0308 (4)
H16A0.36940.01950.63060.037*
C170.3681 (2)0.14279 (15)0.53839 (11)0.0286 (4)
H17A0.35140.09540.48840.034*
U11U22U33U12U13U23
O10.0618 (8)0.0246 (7)0.0265 (6)0.0064 (6)0.0101 (5)0.0045 (5)
O20.0576 (7)0.0236 (6)0.0238 (6)−0.0019 (5)0.0080 (5)0.0045 (5)
O30.0604 (8)0.0235 (6)0.0221 (6)0.0007 (5)0.0030 (5)0.0025 (5)
N10.0412 (7)0.0216 (7)0.0196 (7)0.0017 (5)0.0047 (5)0.0045 (5)
C10.0299 (7)0.0271 (8)0.0192 (7)0.0005 (6)0.0037 (5)0.0022 (6)
C20.0352 (7)0.0234 (8)0.0226 (8)0.0011 (6)0.0057 (6)0.0038 (6)
C30.0302 (7)0.0258 (8)0.0202 (7)−0.0002 (6)0.0059 (5)0.0011 (6)
C40.0380 (8)0.0253 (8)0.0271 (8)−0.0008 (6)0.0084 (6)−0.0007 (6)
C50.0392 (8)0.0315 (9)0.0241 (8)0.0001 (7)0.0060 (6)−0.0057 (7)
C60.0365 (8)0.0393 (10)0.0208 (7)0.0005 (7)0.0057 (6)0.0008 (7)
C70.0369 (8)0.0294 (9)0.0211 (8)0.0007 (7)0.0054 (6)0.0035 (6)
C80.0288 (7)0.0260 (9)0.0208 (7)0.0001 (6)0.0042 (5)0.0025 (6)
C90.0349 (7)0.0239 (8)0.0214 (7)−0.0006 (6)0.0043 (6)0.0037 (6)
C100.0378 (8)0.0250 (8)0.0184 (7)−0.0014 (6)0.0041 (6)0.0010 (6)
C110.0325 (7)0.0265 (8)0.0195 (7)0.0004 (6)0.0027 (6)0.0029 (6)
C120.0289 (7)0.0270 (8)0.0201 (8)0.0007 (6)0.0037 (6)0.0046 (6)
C130.0373 (8)0.0286 (9)0.0227 (8)0.0001 (6)0.0045 (6)0.0017 (6)
C140.0403 (9)0.0382 (10)0.0191 (7)−0.0006 (7)0.0048 (6)−0.0015 (6)
C150.0351 (8)0.0412 (10)0.0187 (7)0.0001 (7)0.0032 (6)0.0077 (7)
C160.0390 (8)0.0287 (9)0.0247 (8)−0.0003 (7)0.0034 (6)0.0070 (7)
C170.0373 (8)0.0282 (9)0.0202 (7)0.0002 (6)0.0024 (6)0.0017 (6)
O1—C21.217 (2)C7—C81.393 (2)
O2—C91.225 (2)C7—H7A0.9500
O3—C111.212 (2)C8—C91.489 (2)
N1—C111.381 (2)C9—C101.466 (2)
N1—C11.3869 (19)C10—H10A0.9500
N1—H1A0.8800C11—C121.501 (2)
C1—C101.345 (2)C12—C131.393 (2)
C1—C21.500 (2)C12—C171.394 (2)
C2—C31.484 (2)C13—C141.390 (2)
C3—C41.392 (2)C13—H13A0.9500
C3—C81.397 (2)C14—C151.387 (3)
C4—C51.386 (2)C14—H14A0.9500
C4—H4A0.9500C15—C161.386 (3)
C5—C61.390 (3)C15—H15A0.9500
C5—H5A0.9500C16—C171.393 (2)
C6—C71.387 (2)C16—H16A0.9500
C6—H6A0.9500C17—H17A0.9500
C11—N1—C1125.79 (14)O2—C9—C10120.48 (15)
C11—N1—H1A117.1O2—C9—C8121.05 (14)
C1—N1—H1A117.1C10—C9—C8118.44 (14)
C10—C1—N1127.04 (15)C1—C10—C9121.76 (15)
C10—C1—C2121.04 (14)C1—C10—H10A119.1
N1—C1—C2111.90 (14)C9—C10—H10A119.1
O1—C2—C3122.60 (16)O3—C11—N1121.69 (14)
O1—C2—C1119.73 (14)O3—C11—C12121.20 (15)
C3—C2—C1117.67 (14)N1—C11—C12117.10 (15)
C4—C3—C8120.45 (15)C13—C12—C17119.61 (14)
C4—C3—C2119.49 (15)C13—C12—C11115.94 (15)
C8—C3—C2120.05 (15)C17—C12—C11124.45 (15)
C5—C4—C3119.67 (16)C14—C13—C12120.32 (16)
C5—C4—H4A120.2C14—C13—H13A119.8
C3—C4—H4A120.2C12—C13—H13A119.8
C4—C5—C6120.13 (16)C15—C14—C13119.96 (16)
C4—C5—H5A119.9C15—C14—H14A120.0
C6—C5—H5A119.9C13—C14—H14A120.0
C7—C6—C5120.31 (15)C16—C15—C14119.95 (15)
C7—C6—H6A119.8C16—C15—H15A120.0
C5—C6—H6A119.8C14—C15—H15A120.0
C6—C7—C8120.04 (16)C15—C16—C17120.41 (17)
C6—C7—H7A120.0C15—C16—H16A119.8
C8—C7—H7A120.0C17—C16—H16A119.8
C7—C8—C3119.36 (16)C16—C17—C12119.75 (16)
C7—C8—C9120.32 (15)C16—C17—H17A120.1
C3—C8—C9120.32 (14)C12—C17—H17A120.1
C11—N1—C1—C10−2.6 (3)C3—C8—C9—O2177.33 (15)
C11—N1—C1—C2175.82 (14)C7—C8—C9—C10175.06 (14)
C10—C1—C2—O1170.53 (16)C3—C8—C9—C10−4.8 (2)
N1—C1—C2—O1−8.0 (2)N1—C1—C10—C9−177.44 (15)
C10—C1—C2—C3−9.6 (2)C2—C1—C10—C94.3 (2)
N1—C1—C2—C3171.88 (13)O2—C9—C10—C1−179.15 (15)
O1—C2—C3—C48.5 (2)C8—C9—C10—C13.0 (2)
C1—C2—C3—C4−171.42 (14)C1—N1—C11—O32.9 (3)
O1—C2—C3—C8−172.50 (15)C1—N1—C11—C12−175.70 (14)
C1—C2—C3—C87.6 (2)O3—C11—C12—C13−8.8 (2)
C8—C3—C4—C50.1 (2)N1—C11—C12—C13169.78 (14)
C2—C3—C4—C5179.07 (15)O3—C11—C12—C17172.36 (16)
C3—C4—C5—C61.4 (3)N1—C11—C12—C17−9.0 (2)
C4—C5—C6—C7−1.4 (2)C17—C12—C13—C140.4 (2)
C5—C6—C7—C8−0.1 (2)C11—C12—C13—C14−178.52 (15)
C6—C7—C8—C31.6 (2)C12—C13—C14—C15−0.3 (2)
C6—C7—C8—C9−178.34 (14)C13—C14—C15—C16−0.2 (3)
C4—C3—C8—C7−1.5 (2)C14—C15—C16—C170.5 (3)
C2—C3—C8—C7179.46 (14)C15—C16—C17—C12−0.5 (2)
C4—C3—C8—C9178.37 (14)C13—C12—C17—C160.0 (2)
C2—C3—C8—C9−0.6 (2)C11—C12—C17—C16178.79 (15)
C7—C8—C9—O2−2.8 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.882.653.3299 (19)135
C4—H4A···O3i0.952.493.149 (2)127
C17—H17A···O2i0.952.573.404 (2)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O2i 0.882.653.3299 (19)135
C4—H4A⋯O3i 0.952.493.149 (2)127
C17—H17A⋯O2i 0.952.573.404 (2)146

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antiplatelet, antiinflammatory, and antiallergic activities of substituted 3-chloro-5,8-dimethoxy-1,4-naphthoquinone and related compounds.

Authors:  L J Huang; F C Chang; K H Lee; J P Wang; C M Teng; S C Kuo
Journal:  Bioorg Med Chem       Date:  1998-12       Impact factor: 3.641

3.  Synthesis and antiplatelet, antiinflammatory, and antiallergic activities of 2-substituted 3-chloro-1,4-naphthoquinone derivatives.

Authors:  J C Lien; L J Huang; J P Wang; C M Teng; K H Lee; S C Kuo
Journal:  Bioorg Med Chem       Date:  1997-12       Impact factor: 3.641

4.  N-(3-Bromo-1,4-dioxo-1,4-dihydro-2-naphth-yl)-4-fluoro-N-(4-fluoro-benzo-yl)benzamide.

Authors:  Emmanuel S Akinboye; Ray J Butcher; Dwayne A Wright; Yakini Brandy; Oladapo Bakare
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-10

5.  Synthesis and MEK1 inhibitory activities of imido-substituted 2-chloro-1,4-naphthoquinones.

Authors:  Oladapo Bakare; Curtis L Ashendel; Hairuo Peng; Leon H Zalkow; Edward M Burgess
Journal:  Bioorg Med Chem       Date:  2003-07-17       Impact factor: 3.641

6.  N-Benzoyl-N-(1,4-dioxonaphthalen-2-yl)benzamide.

Authors:  Yakini Brandy; Ray J Butcher; Oladapo Bakare
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-07
  6 in total
  1 in total

1.  2-Chloro-N-(2-chloro-benzo-yl)-N-(2-ethyl-4-oxo-3,4-di-hydro-quinazolin-3-yl)benzamide.

Authors:  Oladapo Bakare; Candice Thompson; Yakini Brandy; Ray J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-29
  1 in total

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