Literature DB >> 21581890

N-(3-Bromo-1,4-dioxo-1,4-dihydro-2-naphth-yl)-4-fluoro-N-(4-fluoro-benzo-yl)benzamide.

Emmanuel S Akinboye1, Ray J Butcher, Dwayne A Wright, Yakini Brandy, Oladapo Bakare.   

Abstract

In the title compound, C(24)H(12)BrF(2)NO(4), synthesized from 2-amino-3-bromo-1,4-naphthoquinone and 4-fluoro-benzoyl chloride, the two p-fluoro-phenyl rings are inclined at 73.9 (1) and 73.6 (1)° to the naphthoquinone ring system. The two imido carbonyl O atoms are anti to each other, while the fluoro-phenyl rings are located opposite each other, connected to the imide group in a funnel-like arrangement. This conformation allows the fluorine groups be oriented slightly away from each other. An examination of the packing shows a close inter-molecular F⋯O contact of 2.982 (5) Å and a Br⋯O contact of 2.977 (4) Å. In addition, the mol-ecules are linked by weak inter-molecular C-H⋯O and C-H⋯F inter-actions.

Entities:  

Year:  2009        PMID: 21581890      PMCID: PMC2968378          DOI: 10.1107/S1600536809000117

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar structures, see: Lien et al. (1997 ▶); Huang et al. (2005 ▶); Bakare et al. (2003 ▶); Akinboye et al. (2009 ▶); Win et al. (2005 ▶); Rubin-Preminger et al. (2004 ▶). For general background, see: Berhe et al. (2008 ▶).

Experimental

Crystal data

C24H12BrF2NO4 M = 496.26 Monoclinic, a = 14.5931 (3) Å b = 6.6471 (1) Å c = 20.6324 (4) Å β = 98.407 (2)° V = 1979.88 (6) Å3 Z = 4 Cu Kα radiation μ = 3.30 mm−1 T = 200 (2) K 0.53 × 0.48 × 0.32 mm

Data collection

Oxford Diffraction Gemini R diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.230, T max = 0.348 7835 measured reflections 3802 independent reflections 3362 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.158 S = 1.14 3802 reflections 289 parameters H-atom parameters constrained Δρmax = 1.29 e Å−3 Δρmin = −0.51 e Å−3 Data collection: CrysAlisPro (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlisPro; data reduction: CrysAlisPro; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809000117/bq2117sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000117/bq2117Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H12BrF2NO4F(000) = 992
Mr = 496.26Dx = 1.665 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ynCell parameters from 5844 reflections
a = 14.5931 (3) Åθ = 4.0–73.4°
b = 6.6471 (1) ŵ = 3.30 mm1
c = 20.6324 (4) ÅT = 200 K
β = 98.407 (2)°Prism, pale yellow
V = 1979.88 (6) Å30.53 × 0.48 × 0.32 mm
Z = 4
Oxford Diffraction Gemini R diffractometer3802 independent reflections
Radiation source: fine-focus sealed tube3362 reflections with I > 2σ(I)
graphiteRint = 0.023
Detector resolution: 10.5081 pixels mm-1θmax = 73.6°, θmin = 4.0°
φ and ω scansh = −17→18
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −8→5
Tmin = 0.230, Tmax = 0.348l = −25→25
7835 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.0639P)2 + 6.5199P] where P = (Fo2 + 2Fc2)/3
3802 reflections(Δ/σ)max < 0.001
289 parametersΔρmax = 1.29 e Å3
0 restraintsΔρmin = −0.51 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br0.22095 (3)0.70099 (8)0.19146 (2)0.0444 (2)
F1A−0.2690 (2)0.9709 (5)0.41727 (16)0.0599 (8)
F1B0.1251 (3)0.7110 (6)0.52944 (16)0.0752 (11)
O10.1976 (2)0.7543 (6)0.04619 (17)0.0448 (8)
O2−0.1290 (2)0.8464 (5)0.12723 (16)0.0439 (8)
O1A−0.0683 (2)0.4826 (5)0.21656 (17)0.0479 (8)
O1B0.0933 (2)1.0688 (5)0.24341 (15)0.0424 (7)
N0.0163 (2)0.7707 (6)0.22161 (18)0.0358 (8)
C10.1109 (3)0.7445 (7)0.1341 (2)0.0330 (9)
C20.1213 (3)0.7515 (6)0.0634 (2)0.0335 (9)
C30.0344 (3)0.7515 (6)0.0152 (2)0.0336 (9)
C40.0391 (3)0.7337 (7)−0.0509 (2)0.0386 (10)
H4A0.09760.7218−0.06560.046*
C5−0.0414 (4)0.7333 (6)−0.0961 (2)0.0404 (10)
H5A−0.03800.7208−0.14150.048*
C6−0.1272 (3)0.7512 (7)−0.0744 (2)0.0395 (10)
H6A−0.18240.7503−0.10510.047*
C7−0.1317 (3)0.7702 (7)−0.0086 (2)0.0375 (10)
H7A−0.19030.78300.00590.045*
C8−0.0513 (3)0.7706 (6)0.0370 (2)0.0333 (9)
C9−0.0579 (3)0.7970 (6)0.1070 (2)0.0343 (9)
C100.0287 (3)0.7658 (6)0.1550 (2)0.0324 (9)
C1A−0.0557 (3)0.6469 (7)0.2405 (2)0.0372 (10)
C2A−0.1127 (3)0.7365 (7)0.2871 (2)0.0363 (9)
C3A−0.1389 (3)0.9372 (7)0.2822 (2)0.0389 (10)
H3AA−0.11941.01990.24930.047*
C4A−0.1936 (3)1.0168 (8)0.3254 (2)0.0424 (10)
H4AA−0.21311.15320.32220.051*
C5A−0.2187 (3)0.8922 (9)0.3732 (2)0.0457 (11)
C6A−0.1944 (4)0.6934 (8)0.3788 (3)0.0492 (12)
H6AA−0.21350.61200.41220.059*
C7A−0.1415 (3)0.6137 (8)0.3348 (2)0.0444 (11)
H7AA−0.12480.47540.33710.053*
C1B0.0646 (3)0.9152 (7)0.2643 (2)0.0354 (9)
C2B0.0816 (3)0.8578 (8)0.3349 (2)0.0382 (10)
C3B0.0772 (3)1.0046 (8)0.3817 (2)0.0452 (11)
H3BA0.06411.13970.36850.054*
C4B0.0918 (4)0.9575 (10)0.4476 (3)0.0529 (13)
H4BA0.08801.05760.47990.063*
C5B0.1121 (4)0.7597 (10)0.4649 (3)0.0544 (14)
C6B0.1210 (3)0.6130 (9)0.4200 (3)0.0517 (13)
H6BA0.13770.47980.43370.062*
C7B0.1051 (3)0.6619 (8)0.3541 (2)0.0430 (11)
H7BA0.11030.56160.32200.052*
U11U22U33U12U13U23
Br0.0270 (3)0.0572 (4)0.0469 (3)0.0056 (2)−0.00134 (19)0.0002 (2)
F1A0.0519 (17)0.068 (2)0.0664 (19)0.0020 (15)0.0300 (15)−0.0024 (16)
F1B0.084 (3)0.098 (3)0.0405 (17)−0.006 (2)−0.0033 (16)0.0140 (17)
O10.0291 (15)0.057 (2)0.0496 (19)0.0045 (14)0.0103 (13)−0.0014 (16)
O20.0304 (15)0.058 (2)0.0429 (17)0.0055 (15)0.0043 (13)−0.0034 (15)
O1A0.0466 (19)0.0395 (19)0.059 (2)−0.0065 (15)0.0130 (16)−0.0070 (16)
O1B0.0404 (17)0.0418 (18)0.0429 (17)−0.0065 (14)−0.0012 (13)−0.0001 (14)
N0.0286 (17)0.042 (2)0.0366 (19)−0.0023 (15)0.0036 (14)−0.0002 (15)
C10.0211 (18)0.033 (2)0.043 (2)0.0010 (16)−0.0030 (16)−0.0005 (17)
C20.032 (2)0.025 (2)0.043 (2)0.0023 (16)0.0040 (17)−0.0023 (17)
C30.033 (2)0.026 (2)0.041 (2)0.0018 (17)0.0048 (17)0.0015 (17)
C40.044 (3)0.029 (2)0.043 (2)0.0020 (19)0.0075 (19)0.0007 (18)
C50.056 (3)0.023 (2)0.041 (2)0.0026 (19)0.006 (2)−0.0002 (17)
C60.045 (3)0.027 (2)0.043 (2)−0.0013 (19)−0.006 (2)0.0010 (18)
C70.031 (2)0.034 (2)0.046 (2)0.0018 (18)0.0000 (18)0.0016 (18)
C80.030 (2)0.027 (2)0.042 (2)−0.0008 (16)0.0012 (17)0.0009 (17)
C90.027 (2)0.033 (2)0.042 (2)−0.0026 (17)0.0021 (17)0.0000 (17)
C100.031 (2)0.026 (2)0.040 (2)−0.0008 (16)0.0012 (17)0.0000 (16)
C1A0.030 (2)0.042 (3)0.039 (2)−0.0005 (19)0.0017 (17)0.0016 (19)
C2A0.027 (2)0.042 (2)0.039 (2)−0.0057 (18)0.0015 (17)0.0000 (18)
C3A0.030 (2)0.046 (3)0.040 (2)−0.0022 (19)0.0029 (17)0.0060 (19)
C4A0.030 (2)0.046 (3)0.051 (3)0.0027 (19)0.0042 (19)0.003 (2)
C5A0.030 (2)0.062 (3)0.046 (3)−0.003 (2)0.0092 (19)−0.002 (2)
C6A0.045 (3)0.051 (3)0.055 (3)−0.005 (2)0.015 (2)0.009 (2)
C7A0.039 (2)0.041 (3)0.054 (3)−0.004 (2)0.009 (2)0.004 (2)
C1B0.0225 (18)0.042 (3)0.041 (2)−0.0030 (17)0.0015 (16)−0.0013 (19)
C2B0.0250 (19)0.049 (3)0.040 (2)−0.0066 (19)0.0008 (16)0.000 (2)
C3B0.036 (2)0.050 (3)0.049 (3)−0.004 (2)0.003 (2)−0.002 (2)
C4B0.046 (3)0.069 (4)0.043 (3)−0.008 (3)0.004 (2)−0.007 (2)
C5B0.040 (3)0.083 (4)0.039 (3)−0.012 (3)−0.001 (2)0.010 (3)
C6B0.035 (2)0.062 (3)0.056 (3)0.002 (2)−0.002 (2)0.011 (3)
C7B0.029 (2)0.051 (3)0.048 (3)0.003 (2)−0.0004 (18)0.002 (2)
Br—C11.873 (4)C9—C101.503 (6)
F1A—C5A1.353 (6)C1A—C2A1.486 (6)
F1B—C5B1.356 (6)C2A—C3A1.387 (7)
O1—C21.217 (5)C2A—C7A1.390 (7)
O2—C91.218 (5)C3A—C4A1.385 (7)
O1A—C1A1.201 (6)C3A—H3AA0.9500
O1B—C1B1.207 (6)C4A—C5A1.378 (7)
N—C101.412 (6)C4A—H4AA0.9500
N—C1B1.419 (6)C5A—C6A1.369 (8)
N—C1A1.433 (6)C6A—C7A1.381 (7)
C1—C101.340 (6)C6A—H6AA0.9500
C1—C21.489 (6)C7A—H7AA0.9500
C2—C31.493 (6)C1B—C2B1.492 (6)
C3—C41.382 (6)C2B—C3B1.381 (7)
C3—C81.395 (6)C2B—C7B1.390 (7)
C4—C51.388 (7)C3B—C4B1.380 (7)
C4—H4A0.9500C3B—H3BA0.9500
C5—C61.395 (7)C4B—C5B1.383 (9)
C5—H5A0.9500C4B—H4BA0.9500
C6—C71.374 (7)C5B—C6B1.365 (9)
C6—H6A0.9500C6B—C7B1.384 (7)
C7—C81.393 (6)C6B—H6BA0.9500
C7—H7A0.9500C7B—H7BA0.9500
C8—C91.473 (6)
C10—N—C1B119.8 (4)C7A—C2A—C1A118.6 (4)
C10—N—C1A117.0 (4)C4A—C3A—C2A119.9 (4)
C1B—N—C1A122.5 (4)C4A—C3A—H3AA120.0
C10—C1—C2122.5 (4)C2A—C3A—H3AA120.0
C10—C1—Br122.5 (3)C5A—C4A—C3A118.0 (5)
C2—C1—Br115.0 (3)C5A—C4A—H4AA121.0
O1—C2—C1121.0 (4)C3A—C4A—H4AA121.0
O1—C2—C3122.0 (4)F1A—C5A—C6A118.4 (5)
C1—C2—C3117.0 (4)F1A—C5A—C4A118.4 (5)
C4—C3—C8120.1 (4)C6A—C5A—C4A123.2 (5)
C4—C3—C2119.9 (4)C5A—C6A—C7A118.6 (5)
C8—C3—C2120.0 (4)C5A—C6A—H6AA120.7
C3—C4—C5120.3 (4)C7A—C6A—H6AA120.7
C3—C4—H4A119.8C6A—C7A—C2A119.7 (5)
C5—C4—H4A119.8C6A—C7A—H7AA120.1
C4—C5—C6119.7 (4)C2A—C7A—H7AA120.1
C4—C5—H5A120.2O1B—C1B—N121.2 (4)
C6—C5—H5A120.2O1B—C1B—C2B123.3 (4)
C7—C6—C5120.0 (4)N—C1B—C2B115.4 (4)
C7—C6—H6A120.0C3B—C2B—C7B119.9 (4)
C5—C6—H6A120.0C3B—C2B—C1B119.0 (4)
C6—C7—C8120.7 (4)C7B—C2B—C1B121.1 (4)
C6—C7—H7A119.7C4B—C3B—C2B120.8 (5)
C8—C7—H7A119.7C4B—C3B—H3BA119.6
C7—C8—C3119.3 (4)C2B—C3B—H3BA119.6
C7—C8—C9119.6 (4)C3B—C4B—C5B117.8 (5)
C3—C8—C9121.1 (4)C3B—C4B—H4BA121.1
O2—C9—C8123.4 (4)C5B—C4B—H4BA121.1
O2—C9—C10119.2 (4)F1B—C5B—C6B118.9 (6)
C8—C9—C10117.4 (4)F1B—C5B—C4B118.3 (5)
C1—C10—N124.3 (4)C6B—C5B—C4B122.8 (5)
C1—C10—C9120.6 (4)C5B—C6B—C7B118.7 (5)
N—C10—C9115.0 (4)C5B—C6B—H6BA120.6
O1A—C1A—N119.0 (4)C7B—C6B—H6BA120.6
O1A—C1A—C2A124.3 (4)C6B—C7B—C2B119.9 (5)
N—C1A—C2A116.6 (4)C6B—C7B—H7BA120.1
C3A—C2A—C7A120.6 (4)C2B—C7B—H7BA120.1
C3A—C2A—C1A120.8 (4)
C10—C1—C2—O1171.7 (4)C1B—N—C1A—O1A−150.5 (4)
Br—C1—C2—O1−8.9 (6)C10—N—C1A—C2A−138.8 (4)
C10—C1—C2—C3−9.3 (6)C1B—N—C1A—C2A31.9 (6)
Br—C1—C2—C3170.1 (3)O1A—C1A—C2A—C3A−138.5 (5)
O1—C2—C3—C46.7 (7)N—C1A—C2A—C3A39.0 (6)
C1—C2—C3—C4−172.3 (4)O1A—C1A—C2A—C7A39.8 (7)
O1—C2—C3—C8−172.9 (4)N—C1A—C2A—C7A−142.8 (4)
C1—C2—C3—C88.1 (6)C7A—C2A—C3A—C4A0.5 (7)
C8—C3—C4—C5−0.5 (6)C1A—C2A—C3A—C4A178.8 (4)
C2—C3—C4—C5179.9 (4)C2A—C3A—C4A—C5A1.2 (7)
C3—C4—C5—C60.1 (7)C3A—C4A—C5A—F1A177.4 (4)
C4—C5—C6—C70.3 (7)C3A—C4A—C5A—C6A−1.8 (7)
C5—C6—C7—C8−0.3 (7)F1A—C5A—C6A—C7A−178.6 (5)
C6—C7—C8—C3−0.1 (7)C4A—C5A—C6A—C7A0.5 (8)
C6—C7—C8—C9178.3 (4)C5A—C6A—C7A—C2A1.3 (8)
C4—C3—C8—C70.5 (6)C3A—C2A—C7A—C6A−1.8 (7)
C2—C3—C8—C7−179.9 (4)C1A—C2A—C7A—C6A179.9 (4)
C4—C3—C8—C9−177.8 (4)C10—N—C1B—O1B22.6 (6)
C2—C3—C8—C91.8 (6)C1A—N—C1B—O1B−147.9 (4)
C7—C8—C9—O2−10.5 (7)C10—N—C1B—C2B−154.1 (4)
C3—C8—C9—O2167.7 (4)C1A—N—C1B—C2B35.4 (6)
C7—C8—C9—C10171.1 (4)O1B—C1B—C2B—C3B40.0 (6)
C3—C8—C9—C10−10.6 (6)N—C1B—C2B—C3B−143.5 (4)
C2—C1—C10—N−176.5 (4)O1B—C1B—C2B—C7B−137.4 (5)
Br—C1—C10—N4.1 (6)N—C1B—C2B—C7B39.1 (6)
C2—C1—C10—C90.4 (6)C7B—C2B—C3B—C4B−3.1 (7)
Br—C1—C10—C9−179.0 (3)C1B—C2B—C3B—C4B179.5 (4)
C1B—N—C10—C156.5 (6)C2B—C3B—C4B—C5B0.9 (7)
C1A—N—C10—C1−132.5 (5)C3B—C4B—C5B—F1B−179.0 (5)
C1B—N—C10—C9−120.6 (4)C3B—C4B—C5B—C6B2.1 (8)
C1A—N—C10—C950.5 (5)F1B—C5B—C6B—C7B178.2 (5)
O2—C9—C10—C1−168.8 (4)C4B—C5B—C6B—C7B−2.9 (8)
C8—C9—C10—C19.6 (6)C5B—C6B—C7B—C2B0.7 (7)
O2—C9—C10—N8.3 (6)C3B—C2B—C7B—C6B2.2 (7)
C8—C9—C10—N−173.2 (4)C1B—C2B—C7B—C6B179.6 (4)
C10—N—C1A—O1A38.7 (6)
D—H···AD—HH···AD···AD—H···A
C5—H5A···O1Bi0.952.563.297 (6)135
C4—H4A···F1Aii0.952.403.266 (6)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5A⋯O1Bi0.952.563.297 (6)135
C4—H4A⋯F1Aii0.952.403.266 (6)151

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antiplatelet, antiinflammatory, and antiallergic activities of substituted 3-chloro-5,8-dimethoxy-1,4-naphthoquinone and related compounds.

Authors:  L J Huang; F C Chang; K H Lee; J P Wang; C M Teng; S C Kuo
Journal:  Bioorg Med Chem       Date:  1998-12       Impact factor: 3.641

3.  Synthesis and antiplatelet, antiinflammatory, and antiallergic activities of 2-substituted 3-chloro-1,4-naphthoquinone derivatives.

Authors:  J C Lien; L J Huang; J P Wang; C M Teng; K H Lee; S C Kuo
Journal:  Bioorg Med Chem       Date:  1997-12       Impact factor: 3.641

4.  Synthesis and MEK1 inhibitory activities of imido-substituted 2-chloro-1,4-naphthoquinones.

Authors:  Oladapo Bakare; Curtis L Ashendel; Hairuo Peng; Leon H Zalkow; Edward M Burgess
Journal:  Bioorg Med Chem       Date:  2003-07-17       Impact factor: 3.641

  4 in total
  5 in total

1.  2-Ferrocenyl-N-(2-ferrocenylbenzo-yl)-N-(4-methyl-2-pyrid-yl)benzamide.

Authors:  John F Gallagher; Steven Alley; Alan J Lough
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-28

2.  2-Fluoro-N-(2-fluoro-benzo-yl)-N-(2-pyrid-yl)benzamide.

Authors:  John F Gallagher; Katie Donnelly; Alan J Lough
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-06

3.  N-(1,4-Dioxo-1,4-dihydro-naphthalen-2-yl)benzamide.

Authors:  Yakini Brandy; Ray J Butcher; Oladapo Bakare
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-25

4.  N-Benzoyl-N-(1,4-dioxonaphthalen-2-yl)benzamide.

Authors:  Yakini Brandy; Ray J Butcher; Oladapo Bakare
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-07

5.  2-Chloro-N-(2-chloro-benzo-yl)-N-(2-ethyl-4-oxo-3,4-di-hydro-quinazolin-3-yl)benzamide.

Authors:  Oladapo Bakare; Candice Thompson; Yakini Brandy; Ray J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-29
  5 in total

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