Literature DB >> 22965088

Draft genome sequence of Flavobacterium sp. strain F52, isolated from the rhizosphere of bell pepper (Capsicum annuum L. cv. Maccabi).

Max Kolton1, Stefan J Green, Yael Meller Harel, Noa Sela, Yigal Elad, Eddie Cytryn.   

Abstract

Here we report the draft genome sequence of Flavobacterium sp. strain F52, isolated from the rhizosphere of bell pepper (Capsicum annuum L. cv. Maccabi). Flavobacterium spp. are ubiquitous in the rhizospheres of agricultural crops; however, little is known about their physiology. To our knowledge, this is the first published genome of a root-associated Flavobacterium strain.

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Year:  2012        PMID： 22965088      PMCID： PMC3457196          DOI： 10.1128/JB.01249-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

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Journal:  Nat Rev Microbiol       Date:  2008-05-07       Impact factor: 60.633

2.  Impact of biochar application to soil on the root-associated bacterial community structure of fully developed greenhouse pepper plants.

Authors:  Max Kolton; Yael Meller Harel; Zohar Pasternak; Ellen R Graber; Yigal Elad; Eddie Cytryn
Journal:  Appl Environ Microbiol       Date:  2011-05-27       Impact factor: 4.792

3.  Contribution of cytophaga-like bacteria to the potential of turnover of carbon, nitrogen, and phosphorus by bacteria in the rhizosphere of barley (Hordeum vulgare L.).

Authors:  J E Johansen; S J Binnerup
Journal:  Microb Ecol       Date:  2002-03-13       Impact factor: 4.552

4.  Pyrosequencing reveals a highly diverse and cultivar-specific bacterial endophyte community in potato roots.

Authors:  Daniel K Manter; Jorge A Delgado; David G Holm; Rachel A Stong
Journal:  Microb Ecol       Date:  2010-04-23       Impact factor: 4.552

5.  A protein secretion system linked to bacteroidete gliding motility and pathogenesis.

Authors:  Keiko Sato; Mariko Naito; Hideharu Yukitake; Hideki Hirakawa; Mikio Shoji; Mark J McBride; Ryan G Rhodes; Koji Nakayama
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-04       Impact factor: 11.205

6.  Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis.

Authors:  Mark J McBride; Gary Xie; Eric C Martens; Alla Lapidus; Bernard Henrissat; Ryan G Rhodes; Eugene Goltsman; Wei Wang; Jian Xu; David W Hunnicutt; Andrew M Staroscik; Timothy R Hoover; Yi-Qiang Cheng; Jennifer L Stein
Journal:  Appl Environ Microbiol       Date:  2009-08-28       Impact factor: 4.792

7.  Identification and potential enzyme capacity of flavobacteria isolated from the rhizosphere of barley (Hordeum vulgare L.).

Authors:  Jens Efsen Johansen; Preben Nielsen; Svend Jørgen Binnerup
Journal:  Can J Microbiol       Date:  2009-03       Impact factor: 2.419

8.  The volatile-producing Flavobacterium johnsoniae strain GSE09 shows biocontrol activity against Phytophthora capsici in pepper.

Authors:  M K Sang; K D Kim
Journal:  J Appl Microbiol       Date:  2012-05-29       Impact factor: 3.772

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  9 in total
  12 in total

1.  Flavobacterium johnsoniae chitinase ChiA is required for chitin utilization and is secreted by the type IX secretion system.

Authors:  Sampada S Kharade; Mark J McBride
Journal:  J Bacteriol       Date:  2013-12-20       Impact factor: 3.490

2.  Identifying the Active Microbiome Associated with Roots and Rhizosphere Soil of Oilseed Rape.

Authors:  Konstantia Gkarmiri; Shahid Mahmood; Alf Ekblad; Sadhna Alström; Nils Högberg; Roger Finlay
Journal:  Appl Environ Microbiol       Date:  2017-10-31       Impact factor: 4.792

3.  Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives.

Authors:  Klaus Schlaeppi; Nina Dombrowski; Ruben Garrido Oter; Emiel Ver Loren van Themaat; Paul Schulze-Lefert
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-30       Impact factor: 11.205

4.  Genetic manipulation of structural color in bacterial colonies.

Authors:  Villads Egede Johansen; Laura Catón; Raditijo Hamidjaja; Els Oosterink; Bodo D Wilts; Torben Sølbeck Rasmussen; Michael Mario Sherlock; Colin J Ingham; Silvia Vignolini
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-22       Impact factor: 11.205

5.  Niche-adaptation in plant-associated Bacteroidetes favours specialisation in organic phosphorus mineralisation.

Authors:  Ian D E A Lidbury; Chiara Borsetto; Andrew R J Murphy; Andrew Bottrill; Alexandra M E Jones; Gary D Bending; John P Hammond; Yin Chen; Elizabeth M H Wellington; David J Scanlan
Journal:  ISME J       Date:  2020-11-30       Impact factor: 10.302

6.  The wild side of plant microbiomes.

Authors:  Juan E Pérez-Jaramillo; Víctor J Carrión; Mattias de Hollander; Jos M Raaijmakers
Journal:  Microbiome       Date:  2018-08-16       Impact factor: 14.650

7.  Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism.

Authors:  Max Kolton; Noa Sela; Yigal Elad; Eddie Cytryn
Journal:  PLoS One       Date:  2013-09-26       Impact factor: 3.240

8.  Plant growth promotion potential is equally represented in diverse grapevine root-associated bacterial communities from different biopedoclimatic environments.

Authors:  Ramona Marasco; Eleonora Rolli; Marco Fusi; Ameur Cherif; Ayman Abou-Hadid; Usama El-Bahairy; Sara Borin; Claudia Sorlini; Daniele Daffonchio
Journal:  Biomed Res Int       Date:  2013-06-26       Impact factor: 3.411

9.  High quality draft genomic sequence of Flavobacterium enshiense DK69(T) and comparison among Flavobacterium genomes.

Authors:  Zhipeng Zeng; Chong Chen; Hailun Du; Gejiao Wang; Mingshun Li
Journal:  Stand Genomic Sci       Date:  2015-11-10

10.  Development of Culture Medium for the Isolation of Flavobacterium and Chryseobacterium from Rhizosphere Soil.

Authors:  Tomoki Nishioka; Mohsen Mohamed Elsharkawy; Haruhisa Suga; Koji Kageyama; Mitsuro Hyakumachi; Masafumi Shimizu
Journal:  Microbes Environ       Date:  2016-04-20       Impact factor: 2.912
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