Literature DB >> 22959267

Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast.

Folkert J van Werven1, Gregor Neuert, Natalie Hendrick, Aurélie Lardenois, Stephen Buratowski, Alexander van Oudenaarden, Michael Primig, Angelika Amon.   

Abstract

The cell-fate decision leading to gametogenesis is essential for sexual reproduction. In S. cerevisiae, only diploid MATa/α but not haploid MATa or MATα cells undergo gametogenesis, known as sporulation. We find that transcription of two long noncoding RNAs (lncRNAs) mediates mating-type control of sporulation. In MATa or MATα haploids, expression of IME1, the central inducer of gametogenesis, is inhibited in cis by transcription of the lncRNA IRT1, located in the IME1 promoter. IRT1 transcription recruits the Set2 histone methyltransferase and the Set3 histone deacetylase complex to establish repressive chromatin at the IME1 promoter. Inhibiting expression of IRT1 and an antisense transcript that antagonizes the expression of the meiotic regulator IME4 allows cells expressing the haploid mating type to sporulate with kinetics that are indistinguishable from that of MATa/α diploids. Conversely, expression of the two lncRNAs abolishes sporulation in MATa/α diploids. Thus, transcription of two lncRNAs governs mating-type control of gametogenesis in yeast.
Copyright © 2012 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22959267      PMCID: PMC3472370          DOI: 10.1016/j.cell.2012.06.049

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  51 in total

1.  Selection for early meiotic mutants in yeast.

Authors:  A P Mitchell; K S Bowdish
Journal:  Genetics       Date:  1992-05       Impact factor: 4.562

2.  An activator/repressor dual system allows tight tetracycline-regulated gene expression in budding yeast.

Authors:  G Bellí; E Garí; L Piedrafita; M Aldea; E Herrero
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

3.  Transcriptional repression at a distance through exclusion of activator binding in vivo.

Authors:  M Shimizu; W Li; H Shindo; A P Mitchell
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-04       Impact factor: 11.205

4.  Repression by the yeast meiotic inhibitor RME1.

Authors:  P A Covitz; A P Mitchell
Journal:  Genes Dev       Date:  1993-08       Impact factor: 11.361

5.  IME4, a gene that mediates MAT and nutritional control of meiosis in Saccharomyces cerevisiae.

Authors:  J C Shah; M J Clancy
Journal:  Mol Cell Biol       Date:  1992-03       Impact factor: 4.272

6.  The yeast RME1 gene encodes a putative zinc finger protein that is directly repressed by a1-alpha 2.

Authors:  P A Covitz; I Herskowitz; A P Mitchell
Journal:  Genes Dev       Date:  1991-11       Impact factor: 11.361

7.  Activation of meiosis and sporulation by repression of the RME1 product in yeast.

Authors:  A P Mitchell; I Herskowitz
Journal:  Nature       Date:  1986 Feb 27-Mar 5       Impact factor: 49.962

8.  Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene.

Authors:  Joseph A Martens; Lisa Laprade; Fred Winston
Journal:  Nature       Date:  2004-06-03       Impact factor: 49.962

9.  Requirement for RGR1 and SIN4 in RME1-dependent repression in Saccharomyces cerevisiae.

Authors:  P A Covitz; W Song; A P Mitchell
Journal:  Genetics       Date:  1994-11       Impact factor: 4.562

10.  Rme1, a negative regulator of meiosis, is also a positive activator of G1 cyclin gene expression.

Authors:  W M Toone; A L Johnson; G R Banks; J H Toyn; D Stuart; C Wittenberg; L H Johnston
Journal:  EMBO J       Date:  1995-12-01       Impact factor: 11.598

View more
  126 in total

1.  Constitutive turnover of histone H2A.Z at yeast promoters requires the preinitiation complex.

Authors:  Michael Tramantano; Lu Sun; Christy Au; Daniel Labuz; Zhimin Liu; Mindy Chou; Chen Shen; Ed Luk
Journal:  Elife       Date:  2016-07-20       Impact factor: 8.140

Review 2.  Gene regulation by antisense transcription.

Authors:  Vicent Pelechano; Lars M Steinmetz
Journal:  Nat Rev Genet       Date:  2013-11-12       Impact factor: 53.242

Review 3.  Transcription termination and the control of the transcriptome: why, where and how to stop.

Authors:  Odil Porrua; Domenico Libri
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

4.  mRNA quantification using single-molecule FISH in Drosophila embryos.

Authors:  Tatjana Trcek; Timothée Lionnet; Hari Shroff; Ruth Lehmann
Journal:  Nat Protoc       Date:  2016-06-08       Impact factor: 13.491

5.  LncRNAs: Bridging environmental sensing and gene expression.

Authors:  Zachary T Beck; Zheng Xing; Elizabeth J Tran
Journal:  RNA Biol       Date:  2016-10-04       Impact factor: 4.652

6.  Genome-wide identification of long non-coding RNA targets of the tomato MADS box transcription factor RIN and function analysis.

Authors:  Tongtong Yu; David T W Tzeng; Ran Li; Jianye Chen; Silin Zhong; Daqi Fu; Benzhong Zhu; Yunbo Luo; Hongliang Zhu
Journal:  Ann Bot       Date:  2019-02-15       Impact factor: 4.357

Review 7.  Budding yeast for budding geneticists: a primer on the Saccharomyces cerevisiae model system.

Authors:  Andrea A Duina; Mary E Miller; Jill B Keeney
Journal:  Genetics       Date:  2014-05       Impact factor: 4.562

8.  Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.

Authors:  Nathan N Lee; Venkata R Chalamcharla; Francisca Reyes-Turcu; Sameet Mehta; Martin Zofall; Vanivilasini Balachandran; Jothy Dhakshnamoorthy; Nitika Taneja; Soichiro Yamanaka; Ming Zhou; Shiv I S Grewal
Journal:  Cell       Date:  2013-11-07       Impact factor: 41.582

Review 9.  Long noncoding RNAs: cellular address codes in development and disease.

Authors:  Pedro J Batista; Howard Y Chang
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

10.  Kinetochore inactivation by expression of a repressive mRNA.

Authors:  Jingxun Chen; Amy Tresenrider; Minghao Chia; David T McSwiggen; Gianpiero Spedale; Victoria Jorgensen; Hanna Liao; Folkert Jacobus van Werven; Elçin Ünal
Journal:  Elife       Date:  2017-09-14       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.