| Literature DB >> 22952630 |
Lena Backlund1, Catharina Lavebratt, Louise Frisén, Pernilla Nikamo, Dzana Hukic Sudic, Lil Träskman-Bendz, Mikael Landén, Gunnar Edman, Marquis P Vawter, Urban Ösby, Martin Schalling.
Abstract
CONTEXT: Rapid cycling is a severe form of bipolar disorder with an increased rate of episodes that is particularly treatment-responsive to chronotherapy and stable sleep-wake cycles. We hypothesized that the P2RX7 gene would be affected by sleep deprivation and be implicated in rapid cycling.Entities:
Mesh:
Substances:
Year: 2012 PMID: 22952630 PMCID: PMC3429455 DOI: 10.1371/journal.pone.0043057
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1P2RX7 gene expression in peripheral blood mononuclear cells from healthy volunteers.
P2RX7 RNA expression was increased by sleep deprivation in men (filled diamonds) and women (open triangles). Blood draw (x-axis) was at 7 p.m. and thereafter once every 6 hours. Sleep deprivation was at time points #6, #7, #8 and #9. RNA levels are the normalized average of exon expression across the entire RefSeq transcript. Diamonds and triangles indicate mean and error bars indicate SEM.
Clinical characteristics of the sample set that are genotyped (n = 569).
| Bipolar disorder type 1 | 569 |
| Men [n (%)] | 241 (42) |
| Women [n (%)] | 328 (58) |
| Age at first depression (md, range) | 23.5 (4–64) |
| Age at first mania (md, range) | 29.0 (6–70) |
| Hospitalized for affected episodes [n (%)] | 508 (88) |
| Mixed episodes [n (%)] | 172 (30) |
| Rapid cycling [n (%)] | 121 (21) |
| Non-rapid cycling [n (%)] | 446 (78) |
SNPs analyzed in P2RX7 gene.
| MAF | MAF | MAF | Genotyping | |||
| SNP | Region | Variation | RC | nonRC | controls | success rate(%) |
| rs35933842 (A/C | Intron 1 | Essential Splice site | 0.0045 | 0.0056 | 0.0053 | 87.5 |
| rs208294 (A/G | Exon 5 | His155Tyr | 0.39 | 0.45 | 0.42 | 86.4 |
| rs7958311 (A/G | Exon 8 | Arg270His | 0.25 | 0.28 | 0.26 | 95.8 |
| rs28360457 (A/G | Exon 9 | Arg307Gln | 0.023 | 0.015 | 0.012 | 87.2 |
| rs1718119 (A/G | Exon 11 | Ala348Thr | 0.36 | 0.39 | 0.40 | 93.6 |
| rs2230911 (G/C | Exon 11 | Thr357Ser | 0.11 | 0.069 | 0.097 | 92.5 |
| rs2230912 (G/A | Exon 13 | Gln460Arg | 0.076 | 0.15 | 0.16 | 99.0 |
| rs3751143 (C/A | Exon 13 | Glu496Ala | 0.16 | 0.16 | 0.15 | 92.7 |
| rs1653624 (A/T | Exon 13 | Ile568Asn | 0.046 | 0.033 | 0.030 | 92.8 |
| rs1621388 (A/G | Exon 13 | Synonymous | 0.37 | 0.40 | 0.40 | 96.8 |
Data from www.ensembl.org . Minor allele first.
Minor allele first, data from www.hapmap.org.
Ancestral allele in CEU population data (CEPH (Utah residents with ancestry from northern and western Europe)) from www.ncbi.nlm.nih.gov.
MAF, minor allele frequency.
Allelic associations for RC compared to nonRC bipolar patients and for RC compared to ABD controls in the P2RX7 gene.
| Bipolar disorder type 1 | Blood donors as controls | |||||||||||
| RC | nonRC | Controls | ||||||||||
| SNP | aa/ab/bb | n | aa/ab/bb | n | p | EMP1 | OR [95% CI] | aa/ab/bb | n | p | EMP1 | OR [95% CI] |
| rs35933842 (A/C) | 0/1/110 | 111 | 0/4/352 | 356 | 0.87 | 0.50 | 0.83 [0.089–7.2] | 0/10/932 | 942 | 0.89 | 0.70 | 0.86 [0.11–6.7] |
| rs208294 (A/G) | 17/52/42 | 111 | 70/173/107 | 350 | 0.12 | 0.11 | 0.78 [0.59–1.1] | 158/463/310 | 931 | 0.51 | 0.43 | 0.91 [0.66–1.2] |
| rs7958311 (A/G) | 8/39/63 | 110 | 34/151/209 | 394 | 0.44 | 0.55 | 0.88 [0.61–1.2] | 69/409/562 | 1040 | 0.62 | 0.75 | 0.92 [0.68–1.3] |
| rs28360457 (A/G) | 0/5/105 | 110 | 0/11/345 | 356 | 0.45 | 0.86 | 1.5 [0.51–4.3] | 0/22/917 | 939 | 0.12 | 0.087 | 2.2 [0.74–5.2] |
| rs1718119 (A/G) | 17/52/51 | 120 | 70/208/166 | 444 | 0.37 | 0.56 | 0.87 [0.81–1.4] | 161/433/350 | 944 | 0.29 | 0.28 | 0.86 [0.79–1.3] |
| rs2230911 (G/C) | 1/24/94 | 119 | 3/53/372 | 428 | 0.051 | 0.043 | 1.6 [1.0–2.7] | 8/166/769 | 943 | 0.44 | 0.48 | 1.2 [0.74–1.8] |
| rs2230912 (G/A) | 0/18/101 | 119 | 7/119/315 | 441 | 0.0027 | 0.0026 | 0.45 [0.28–0.77] | 26/274/735 | 1035 | 0.0016 | 0.0015 | 0.45 [0.27–0.72] |
| rs3751143 (C/A) | 2/34/83 | 119 | 12/110/304 | 426 | 0.93 | 0.86 | 1.0 [0.69–1.5] | 20/240/686 | 946 | 0.55 | 0.59 | 1.1 [0.76–1.6] |
| rs1653624 (A/T) | 0/11/108 | 119 | 0/28/402 | 430 | 0.34 | 0.44 | 1.4 [0.71–2.9] | 2/52/892 | 946 | 0.21 | 0.17 | 1.5 [0.82–3.1] |
| rs1621388 (A/G) | 17/49/47 | 113 | 69/205/152 | 426 | 0.35 | 0.56 | 0.86 [0.64–1.2] | 174/471/375 | 1020 | 0.37 | 0.33 | 0.88 [0.65–1.2] |
SNP name (minor allele/major allele).
gender as covariate, not corrected for multiple testing.
Point-wise p-value from 10,000 permutations with no covariate (EMP1).
Odds ratio (OR), the proportion of minor versus major allele among affected (RC)/proportion of minor versus major allele among unaffected (nonRC or controls).
Figure 2The strength of linkage disequilibrium (LD) between pairs of SNPs in ABD controls for P2RX7.
The heavy-line frame shows suggested haplotype blocks. The numbers in the squares represent the pair-wise D′ value, empty squares stand for D′ = 1. Pink-red color indicates a pair-wise LOD≥2 with redness proportional to D′. White-blue square indicates LOD<2.
Haplotype association for RC compared with nonRC patients and RC patients compared with blood donor controls, in the P2RX7 gene.
| RC compared with nonRC | |||||||||
|
| rs1718119 | rs2230911 | rs2230912 | rs3751143 | rs1653624 | rs1621388 | FRC/FnonRC | p | OR [95% CI] |
| Haplotype 1 | A | C | G | T | T | T | 8.2/16.1 | 0.0029 | 0.45 [0.28–0.78] |
| Haplotype 2 | A | C | A | T | T | T | 28.2/24.6 | 0.28 | 1.2 [0.87–1.7] |
| Haplotype 3 | G | C | A | T | A | C | 5.0/3.0 | 0.14 | 1.8 [0.83–3.5] |
| Haplotype 4 | G | C | A | G | T | C | 16.4/15.2 | 0.68 | 1.1 [0.73–1.6] |
| Haplotype 5 | G | G | A | T | T | C | 10.0/6.9 | 0.13 | 1.5 [0.90–2.5] |
| Haplotype 6 | G | C | A | T | T | C | 32.3/34.3 | 0.58 | 0.91 [0.67–1.3] |
Fcases/Fcontrols, percent with that haplotype in the RC group/non-RC/ABD controls with that haplotype, with successful haplotyping.
not corrected for multiple testing.
Odds ratio (OR), the ratio specific haplotype versus all other haplotypes among RC patients/ratio specific haplotype versus all other haplotypes among nonRC patients.