Literature DB >> 22947199

Evidence for only oxygenative cleavage of aldehydes to alk(a/e)nes and formate by cyanobacterial aldehyde decarbonylases.

Ning Li1, Wei-Chen Chang, Douglas M Warui, Squire J Booker, Carsten Krebs, J Martin Bollinger.   

Abstract

Cyanobacterial aldehyde decarbonylases (ADs) catalyze the conversion of C(n) fatty aldehydes to formate (HCO(2)(-)) and the corresponding C(n-1) alk(a/e)nes. Previous studies of the Nostoc punctiforme (Np) AD produced in Escherichia coli (Ec) showed that this apparently hydrolytic reaction is actually a cryptically redox oxygenation process, in which one O-atom is incorporated from O(2) into formate and a protein-based reducing system (NADPH, ferredoxin, and ferredoxin reductase; N/F/FR) provides all four electrons needed for the complete reduction of O(2). Two subsequent publications by Marsh and co-workers [ Das, et al. ( 2011 ) Angew. Chem. Int. Ed. 50 , 7148 - 7152 ; Eser, et al. ( 2011 ) Biochemistry 50 , 10743 - 10750 ] reported that their Ec-expressed Np and Prochlorococcus marinus (Pm) AD preparations transform aldehydes to the same products more rapidly by an O(2)-independent, truly hydrolytic process, which they suggested proceeded by transient substrate reduction with obligatory participation by the reducing system (they used a chemical system, NADH and phenazine methosulfate; N/PMS). To resolve this discrepancy, we re-examined our preparations of both AD orthologues by a combination of (i) activity assays in the presence and absence of O(2) and (ii) (18)O(2) and H(2)(18)O isotope-tracer experiments with direct mass-spectrometric detection of the HCO(2)(-) product. For multiple combinations of the AD orthologue (Np and Pm), reducing system (protein-based and chemical), and substrate (n-heptanal and n-octadecanal), our preparations strictly require O(2) for activity and do not support detectable hydrolytic formate production, despite having catalytic activities similar to or greater than those reported by Marsh and co-workers. Our results, especially of the (18)O-tracer experiments, suggest that the activity observed by Marsh and co-workers could have arisen from contaminating O(2) in their assays. The definitive reaffirmation of the oxygenative nature of the reaction implies that the enzyme, initially designated as aldehyde decarbonylase when the C1-derived coproduct was thought to be carbon monoxide rather than formate, should be redesignated as aldehyde-deformylating oxygenase (ADO).

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Year:  2012        PMID: 22947199     DOI: 10.1021/bi300912n

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  55 in total

1.  Conversion of Aldehyde to Alkane by a Peroxoiron(III) Complex: A Functional Model for the Cyanobacterial Aldehyde-Deformylating Oxygenase.

Authors:  Alireza Shokri; Lawrence Que
Journal:  J Am Chem Soc       Date:  2015-06-10       Impact factor: 15.419

Review 2.  Leveraging microbial biosynthetic pathways for the generation of 'drop-in' biofuels.

Authors:  Amin Zargar; Constance B Bailey; Robert W Haushalter; Christopher B Eiben; Leonard Katz; Jay D Keasling
Journal:  Curr Opin Biotechnol       Date:  2017-04-17       Impact factor: 9.740

Review 3.  Microbial production of fatty acid-derived fuels and chemicals.

Authors:  Rebecca M Lennen; Brian F Pfleger
Journal:  Curr Opin Biotechnol       Date:  2013-03-28       Impact factor: 9.740

4.  Evidence for a Di-μ-oxo Diamond Core in the Mn(IV)/Fe(IV) Activation Intermediate of Ribonucleotide Reductase from Chlamydia trachomatis.

Authors:  Ryan J Martinie; Elizabeth J Blaesi; Carsten Krebs; J Martin Bollinger; Alexey Silakov; Christopher J Pollock
Journal:  J Am Chem Soc       Date:  2017-01-27       Impact factor: 15.419

5.  Hydrogen Donation but not Abstraction by a Tyrosine (Y68) during Endoperoxide Installation by Verruculogen Synthase (FtmOx1).

Authors:  Noah P Dunham; José M Del Río Pantoja; Bo Zhang; Lauren J Rajakovich; Benjamin D Allen; Carsten Krebs; Amie K Boal; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2019-06-12       Impact factor: 15.419

Review 6.  Divergent mechanisms of iron-containing enzymes for hydrocarbon biosynthesis.

Authors:  Courtney E Wise; Job L Grant; Jose A Amaya; Steven C Ratigan; Chun H Hsieh; Olivia M Manley; Thomas M Makris
Journal:  J Biol Inorg Chem       Date:  2016-12-21       Impact factor: 3.358

Review 7.  Next generation biofuel engineering in prokaryotes.

Authors:  Luisa S Gronenberg; Ryan J Marcheschi; James C Liao
Journal:  Curr Opin Chem Biol       Date:  2013-04-23       Impact factor: 8.822

8.  Mechanistic insights from reaction of α-oxiranyl-aldehydes with cyanobacterial aldehyde deformylating oxygenase.

Authors:  Debasis Das; Benjamin Ellington; Bishwajit Paul; E Neil G Marsh
Journal:  ACS Chem Biol       Date:  2013-12-13       Impact factor: 5.100

9.  Terminal Olefin Profiles and Phylogenetic Analyses of Olefin Synthases of Diverse Cyanobacterial Species.

Authors:  Tao Zhu; Thibault Scalvenzi; Nathalie Sassoon; Xuefeng Lu; Muriel Gugger
Journal:  Appl Environ Microbiol       Date:  2018-06-18       Impact factor: 4.792

10.  Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.

Authors:  Julia J Griese; Ramona Kositzki; Peer Schrapers; Rui M M Branca; Anders Nordström; Janne Lehtiö; Michael Haumann; Martin Högbom
Journal:  J Biol Chem       Date:  2015-08-31       Impact factor: 5.157

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