Literature DB >> 22946616

Stable Cu(II) and Cu(I) mononuclear intermediates in the assembly of the CuA center of Thermus thermophilus cytochrome oxidase.

Kelly N Chacón1, Ninian J Blackburn.   

Abstract

CuA is a dinuclear mixed-valence center located in subunit 2 of the ba(3)-type cytochrome oxidase from Thermus thermophilus. The assembly of this site within the periplasmic membrane is believed to be mediated by the copper chaperones Sco and/or PCuAC, but the biological mechanisms are still poorly understood, thereby stimulating interest in the mechanisms of CuA formation from inorganic ions. The formulation of the CuA center as an electron-delocalized Cu(1.5)-Cu(1.5) system implicates both Cu(II) and Cu(I) states in the metalation process. In earlier work we showed that selenomethionine (SeM) substitution of the coordinated M160 residue provided a ligand-directed probe for studying the copper coordination environment via the Se XAS signal, which was particularly useful for interrogating the Cu(I) states where other spectroscopic probes are absent. In the present study we have investigated the formation of mixed-valence CuA and its M160SeM derivative by stopped-flow UV-vis, EPR, and XAS at both Cu and Se edges, while the formation of fully reduced di-Cu(I) CuA has been studied by XAS alone. Our results establish the presence of previously undetected mononuclear intermediates and show important differences from the metalation reactions of purple CuA azurin. XAS spectroscopy at Cu and Se edges has allowed us to extend mechanistic inferences to formation of the di-Cu(I) state which may be more relevant to biological CuA assembly. In particular, we find that T. thermophilus CuA assembles more rapidly than reported for other CuA systems and that the dominant intermediate along the pathway to mixed-valence is a new green species with λ(max) = 460 nm. This intermediate has been isolated in a homogeneous state and shown to be a mononuclear Cu(II)-(His)(Cys)(2) species with no observable Cu(II)-(Met) interaction. Reduction with dithionite generates its Cu(I) homologue which is again mononuclear but now shows a strong interaction with the Met160 thioether. The results are discussed within the framework of the "coupled distortion" model for Cu(II) thiolates and their relevance to biological metalation reactions of the CuA center.

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Year:  2012        PMID: 22946616      PMCID: PMC3616644          DOI: 10.1021/ja307276z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  46 in total

1.  Solution structure of Sco1: a thioredoxin-like protein Involved in cytochrome c oxidase assembly.

Authors:  Erica Balatri; Lucia Banci; Ivano Bertini; Francesca Cantini; Simone Ciofi-Baffoni
Journal:  Structure       Date:  2003-11       Impact factor: 5.006

2.  Specific copper transfer from the Cox17 metallochaperone to both Sco1 and Cox11 in the assembly of yeast cytochrome C oxidase.

Authors:  Yih-Chern Horng; Paul A Cobine; Andrew B Maxfield; Heather S Carr; Dennis R Winge
Journal:  J Biol Chem       Date:  2004-06-15       Impact factor: 5.157

3.  Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase.

Authors:  P Kuzmic
Journal:  Anal Biochem       Date:  1996-06-01       Impact factor: 3.365

4.  Probing the role of axial methionine in the blue copper center of azurin with unnatural amino acids.

Authors:  Steven M Berry; Martina Ralle; Donald W Low; Ninian J Blackburn; Yi Lu
Journal:  J Am Chem Soc       Date:  2003-07-23       Impact factor: 15.419

Review 5.  Copper protein structures.

Authors:  E T Adman
Journal:  Adv Protein Chem       Date:  1991

6.  Human SCO1 and SCO2 have independent, cooperative functions in copper delivery to cytochrome c oxidase.

Authors:  Scot C Leary; Brett A Kaufman; Giovanna Pellecchia; Guy-Hellen Guercin; Andre Mattman; Michaela Jaksch; Eric A Shoubridge
Journal:  Hum Mol Genet       Date:  2004-06-30       Impact factor: 6.150

7.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

8.  Water-soluble, recombinant CuA-domain of the cytochrome ba3 subunit II from Thermus thermophilus.

Authors:  C E Slutter; D Sanders; P Wittung; B G Malmström; R Aasa; J H Richards; H B Gray; J A Fee
Journal:  Biochemistry       Date:  1996-03-19       Impact factor: 3.162

9.  Metal-metal bonding in biology: EXAFS evidence for a 2.5 A copper-copper bond in the CuA center of cytochrome oxidase.

Authors:  N J Blackburn; M E Barr; W H Woodruff; J van der Oost; S de Vries
Journal:  Biochemistry       Date:  1994-08-30       Impact factor: 3.162

10.  Crystal structure of the membrane-exposed domain from a respiratory quinol oxidase complex with an engineered dinuclear copper center.

Authors:  M Wilmanns; P Lappalainen; M Kelly; E Sauer-Eriksson; M Saraste
Journal:  Proc Natl Acad Sci U S A       Date:  1995-12-19       Impact factor: 11.205

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  12 in total

1.  Formation and Electronic Structure of an Atypical CuA Site.

Authors:  Matthew O Ross; Oriana S Fisher; Marcos N Morgada; Matthew D Krzyaniak; Michael R Wasielewski; Alejandro J Vila; Brian M Hoffman; Amy C Rosenzweig
Journal:  J Am Chem Soc       Date:  2019-03-07       Impact factor: 15.419

2.  pH-regulated metal-ligand switching in the HM loop of ATP7A: a new paradigm for metal transfer chemistry.

Authors:  Chelsey D Kline; Benjamin F Gambill; Mary Mayfield; Svetlana Lutsenko; Ninian J Blackburn
Journal:  Metallomics       Date:  2016-08-01       Impact factor: 4.526

3.  Molecular dynamics simulations of apocupredoxins: insights into the formation and stabilization of copper sites under entatic control.

Authors:  Luciano A Abriata; Alejandro J Vila; Matteo Dal Peraro
Journal:  J Biol Inorg Chem       Date:  2014-01-30       Impact factor: 3.358

Review 4.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

5.  Tracking metal ions through a Cu/Ag efflux pump assigns the functional roles of the periplasmic proteins.

Authors:  Kelly N Chacón; Tiffany D Mealman; Megan M McEvoy; Ninian J Blackburn
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

6.  Binuclear Cu(A) Formation in Biosynthetic Models of Cu(A) in Azurin Proceeds via a Novel Cu(Cys)2His Mononuclear Copper Intermediate.

Authors:  Saumen Chakraborty; Michael J Polen; Kelly N Chacón; Tiffany D Wilson; Yang Yu; Julian Reed; Mark J Nilges; Ninian J Blackburn; Yi Lu
Journal:  Biochemistry       Date:  2015-10-06       Impact factor: 3.162

7.  How periplasmic thioredoxin TlpA reduces bacterial copper chaperone ScoI and cytochrome oxidase subunit II (CoxB) prior to metallation.

Authors:  Helge K Abicht; Martin A Schärer; Nick Quade; Raphael Ledermann; Elisabeth Mohorko; Guido Capitani; Hauke Hennecke; Rudi Glockshuber
Journal:  J Biol Chem       Date:  2014-10-01       Impact factor: 5.157

8.  Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold.

Authors:  Xianghan Mei; Jonathan Alvarez; Adriana Bon Ramos; Uttamkumar Samanta; Dirk Iwata-Reuyl; Manal A Swairjo
Journal:  Proteins       Date:  2016-11-20

9.  Axial interactions in the mixed-valent CuA active site and role of the axial methionine in electron transfer.

Authors:  Ming-Li Tsai; Ryan G Hadt; Nicholas M Marshall; Tiffany D Wilson; Yi Lu; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-20       Impact factor: 11.205

10.  Catalytic M Center of Copper Monooxygenases Probed by Rational Design. Effects of Selenomethionine and Histidine Substitution on Structure and Reactivity.

Authors:  Katherine B Alwan; Evan F Welch; Ninian J Blackburn
Journal:  Biochemistry       Date:  2019-10-28       Impact factor: 3.162

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